Updated August 24, 2010
CBC PUBLICATIONS Funded by CBC Grants
2006
Ghanim M, White KP. Genotyping method to screen individual Drosophila embryos prior to RNA extraction. Biotechniques. 2006 Oct;41(4):414, 416, 418. (PubMed)
Maltsev N, Glass E, Sulakhe D, Rodriguez A, Syed MH, Bompada T, Zhang Y, D'Souza M. UMA2--grid-based high-throughput analysis of genomes and metabolic pathways. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D369-72. (PubMed)
Moorman C, Sun LV, Wang J, de Wit E, Talhout W, Ward LD, Greil F, Lu XJ, White KP, Bussemaker HJ, van Steensel B. Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster. Proc Natl Acad Sci U S A. 2006 Aug 8;103(32):12027-32. (PubMed)
Saikia M, Dai Q, Decatur WA, Fournier MJ, Piccirilli JA, Pan T. A systematic, ligation-based approach to study RNA modifications. RNA. 2006 Nov;12(11):2025-33. (PubMed) (Download PDF)
2007
D'Souza M, Glass EM, Syed MH, Zhang Y, Rodriguez A, Maltsev N, Galperin MY. Links Sentra: a database of signal transduction proteins for comparative genome analysis. Nucleic Acids Res. 2007 Jan;35(Database issue):D271-3. (PubMed)
Dai Q, Fong R, Saikia M, Stephenson D, Yu YT, Pan T, Piccirilli JA. Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine. Nucleic Acids Res. 2007;35(18):6322-9. (PubMed)
Hooper SD, Boué S, Krause R, Jensen LJ, Mason CE, Ghanim M, White KP, Furlong EE, Bork P. Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis. Mol Syst Biol. 2007;3:72. (PubMed)
Kohsaka A, Laposky AD, Ramsey KM, Estrada C, Joshu C, Kobayashi Y, Turek FW, Bass J. High-fat diet disrupts behavioral and molecular circadian rhythms in mice. Cell Metab. 2007 Nov;6(5):414-21. (PubMed)
Maier TM, Casey MS, Becker RH, Dorsey CW, Glass EM, Maltsev N, Zahrt TC, Frank DW. Identification of Francisella tularensis Himar1-Based Transposon Mutants Defective for Replication in Macrophages. Infect Immun, 2007 75(11): 5376-89. (PubMed)
Rodriguez AA, Bompada T, Syed M, Shah PK, Maltsev N. Evolutionary Analysis of Enzymes Using Chisel. Bioinformatics, 2007 13: 1-8. (PubMed) (Download PDF)
Sulakhe D, D'Souza M, Syed M, Alexis RA, Zhang Y, Glass EM, Romine MF, Maltsev N. GNARE: a grid-based server for the analysis of user submitted Genomes. Nucleic Acids Research, 2007, 1–6. (Download PDF)
Zhou D, Xue J, Chen J, Morcillo P, Lambert JD, White KP, Haddad GG. Experimental selection for Drosophila survival in extremely low O2 environment. PLoS One. 2007 May 30;2(5):e490. (PubMed)
2008
Amaral LA. A truer measure of our ignorance. Proc Natl Acad Sci U S A. 2008 May 13;105(19):6795-6. (PubMed)
Chen J, Kim YC, Jung YC, Xuan Z, Dworkin G, Zhang Y, Zhang MQ, Wang SM. Scanning the human genome at kilobase resolution. Genome Res. 2008 May;18(5):751-62. (PubMed) (Download PDF)
Chong HS, Song HA, Lim S, Macrenaris K, Ma X, Lee H, Bui P, Meade T. A novel cholic acid-based contrast enhancement agent for targeted MRI. Bioorg Med Chem Lett. 2008 Apr 1;18(7):2505-8. (PubMed)
Cilliers R, Song Y, Kohlmeir EK, Larson AC, Omary RA, Meade TJ. Modification of embolic-PVA particles with MR contrast agents. Magn Reson Med. 2008 Apr;59(4):898-902. (PubMed)
Green CB, Takahashi JS, Bass J. The meter of metabolism. Cell. 2008 Sep 5;134(5):728-42. (PubMed)
Hua S, Kallen CB, Dhar R, Baquero MT, Mason CE, Russell BA, Shah PK, Liu J, Khramtsov A, Tretiakova MS, Krausz TN, Olopade OI, Rimm DL, White KP. Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression. Mol Syst Biol. 2008;4:188. (PubMed)
Lu J, Fu Y, Kumar S, Shen Y, Zeng K, Xu A, Carthew R, Wu CI. Adaptive evolution of newly emerged micro-RNA genes in Drosophila. Mol Biol Evol. 2008 May;25(5):929-38. (PubMed) (Download PDF)
Lu J, Shen Y, Wu Q, Kumar S, He B, Shi S, Carthew RW, Wang SM, Wu CI. The birth and death of microRNA genes in Drosophila. Nat Genetics 2008 Mar;40(3):351-5. (PubMed) (Download PDF)
Poser I, Sarov M, Hutchins JR, Hériché JK, Toyoda Y, Pozniakovsky A, Weigl D, Nitzsche A, Hegemann B, Bird AW, Pelletier L, Kittler R, Hua S, Naumann R, Augsburg M, Sykora MM, Hofemeister H, Zhang Y, Nasmyth K, White KP, Dietzel S, Mechtler K, Durbin R, Stewart AF, Peters JM, Buchholz F, Hyman AA. BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals. Nat Methods. 2008 May;5(5):409-15. Erratum in: Nat Methods. 2008 Aug;5(8):748. (PubMed)
Shah PK, Tripathi LP, Jensen LJ, Gahnim M, Mason C, Furlong EE, Rodrigues V, White KP, Bork P, Sowdhamini R. Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families. Gene. 2008 Jan 15;407(1-2):199-215. (PubMed)
Shimi T, Pfleghaar K, Kojima S, Pack CG, Solovei I, Goldman AE, Adam SA, Shumaker DK, Kinjo M, Cremer T, Goldman RD. The A- and B-type nuclear lamin networks: microdomains involved in chromatin organization and transcription. Genes Dev. 2008 Dec 15;22(24):3409-21. (PubMed)
Smart AG, Amaral LA, Ottino JM. Cascading failure and robustness in metabolic networks. Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13223-8. (PubMed)
Song Y, Kohlmeir EK, Meade TJ. Synthesis of multimeric MR contrast agents for cellular imaging. J Am Chem Soc. 2008 May 28;130(21):6662-3. (PubMed)
Warmflash A, Dinner AR. Signatures of combinatorial regulation in intrinsic biological noise. Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17262-7. (PubMed)
Vicario S, Mason CE, White KP, Powell JR. Developmental stage and level of codon usage bias in Drosophila. Mol Biol Evol. 2008 Nov;25(11):2269-77. (PubMed)
Wu Q, Kim YC, Lu J, Xuan Z, Chen J, Zheng Y, Zhou T, Zhang MQ, Wu CI, Wang SM. Poly A- transcripts expressed in HeLa cells. PLoS One. 2008 Jul 30;3(7):e2803. (PubMed)
Zhou D, Xue J, Lai JC, Schork NJ, White KP, Haddad GG. Mechanisms underlying hypoxia tolerance in Drosophila melanogaster: hairy as a metabolic switch. PLoS Genet. 2008 Oct;4(10):e1000221. (PubMed)
2009
Adamian L, Gussin HA, Tseng YY, Muni NJ, Feng F, Qian H, Pepperberg DR, Liang J. Structural model of rho1 GABAC receptor based on evolutionary analysis: Testing of predicted protein-protein interactions involved in receptor assembly and function. Protein Sci. 2009 Nov;18(11):2371-83. (PubMed)
Arble DM, Bass J, Laposky AD, Vitaterna MH, Turek FW. Circadian timing of food intake contributes to weight gain. Obesity (Silver Spring). 2009 Nov;17(11):2100-2. (PubMed)
Barick KC, Aslam M, Lin YP, Bahadur D, Prasad PV, Dravid VP. Novel and efficient MR active aqueous colloidal Fe3O4 nanoassemblies. J. Mater. Chem., 2009, 19, 7023 - 7029. (DOI: 10.1039/b911626e)
Ben-Zvi A, Miller EA, Morimoto RI. Collapse of proteostasis represents an early molecular event in Caenorhabditis elegans aging. Proc Natl Acad Sci U S A. 2009 Sep 1;106(35):14914-9. (PubMed)
Bhaskar PT, Nogueira V, Patra KC, Jeon SM, Park Y, Robey RB, Hay N. mTORC1 hyperactivity inhibits serum deprivation-induced apoptosis via increased hexokinase II and GLUT1 expression, sustained Mcl-1 expression, and glycogen synthase kinase 3beta inhibition. Mol Cell Biol. 2009 Sep;29(18):5136-47. (PubMed)
Carthew RW, Sontheimer EJ. Origins and Mechanisms of miRNAs and siRNAs. Cell. 2009 Feb 20;136(4):642-55. Review. (PubMed)
Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, Karpen GH, Kellis M, Lai EC, Lieb JD, MacAlpine DM, Micklem G, Piano F, Snyder M, Stein L, White KP, Waterston RH; modENCODE Consortium. Unlocking the secrets of the genome. Nature. 2009 Jun 18;459(7249):927-30. (PubMed)
Chen WS, Peng XD, Wang Y, Xu PZ, Chen ML, Luo Y, Jeon SM, Coleman K, Haschek WM, Bass J, Philipson LH, Hay N. Leptin deficiency and beta-cell dysfunction underlie type 2 diabetes in compound Akt knockout mice. Mol Cell Biol. 2009 Jun;29(11):3151-62. (PubMed)
Dai Q, Saikia M, Li NS, Pan T, Piccirilli JA. Efficient Chemical Synthesis of AppDNA by Adenylation of Immobilized DNA-5'-monophosphate. Org. Lett., 2009, 11 (5): 1067–1070. (PubMed)
Dechat T, Adam SA, Goldman RD. Nuclear lamins and chromatin: when structure meets function. Adv Enzyme Regul. 2009;49(1):157-66. (PubMed)
Ebalunode JO, Dong X, Ouyang Z, Liang J, Eckenhoff RG, Zheng W. Structure-based shape pharmacophore modeling for the discovery of novel anesthetic compounds. Bioorg Med Chem. 2009 Jul 15;17(14):5133-8. (PubMed)
Eriksson JE, Dechat T, Grin B, Helfand B, Mendez M, Pallari HM, Goldman RD. Introducing intermediate filaments: from discovery to disease. J Clin Invest. 2009 Jul;119(7):1763-71. (PubMed)
Gauhar Z, Sun LV, Hua S, Mason CE, Fuchs F, Li TR, Boutros M, White KP. Genomic mapping of binding regions for the Ecdysone receptor protein complex. Genome Res. 2009 Jun;19(6):1006-13. (PubMed)
Gidalevitz T, Krupinski T, Garcia S, Morimoto RI. Destabilizing protein polymorphisms in the genetic background direct phenotypic expression of mutant SOD1 toxicity. PLoS Genet. 2009 Mar;5(3):e1000399. (PubMed)
Glavaski-Joksimovic A, Virag T, Chang QA, West NC, Mangatu TA, McGrogan MP, Dugich-Djordjevic M, Bohn MC. Reversal of dopaminergic degeneration in a parkinsonian rat following micrografting of human bone marrow-derived neural progenitors. Cell Transplant. 2009;18(7):801-14. (PubMed)
Harney AS, Lee J, Manus LM, Wang P, Ballweg DM, LaBonne C, Meade TJ. Targeted inhibition of Snail family zinc finger transcription factors by oligonucleotide-Co(III) Schiff base conjugate. Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13667-72. (PubMed)
Hua S, Kittler R, White KP. Genomic antagonism between retinoic acid and estrogen signaling in breast cancer. Cell. 2009 Jun 26;137(7):1259-71. (PubMed) (Download PDF)
Huang Z, Dore LC, Li Z, Orkin SH, Feng G, Lin S, Crispino JD. GATA-2 reinforces megakaryocyte development in the absence of GATA-1. Mol Cell Biol. 2009 Sep;29(18):5168-80. (PubMed)
Joshi HM, Lin YP, Aslam M, Prasad PV, Schultz EA, Edelman, R, Meade T, Dravid VP. Effects of shape and size of cobalt ferrite nanostructures on their MRI contrast and thermal activation. J Phys Chem C. 2009 Vol. 113 (41): pp: 17761-17767. . (J. Phys. Chem.)
Krishnaswamy S, Kanteti R, Duke-Cohan JS, Loganathan S, Liu W, Ma PC, Sattler M, Singleton PA, Ramnath N, Innocenti F, Nicolae DL, Ouyang Z, Liang J, Minna J, Kozloff MF, Ferguson MK, Natarajan V, Wang YC, Garcia JG, Vokes EE, Salgia R. Ethnic differences and functional analysis of MET mutations in lung cancer. Clin Cancer Res. 2009 Sep 15;15(18):5714-23. (PubMed)
Lange Y, Ye J, Duban ME, Steck TL. Activation of membrane cholesterol by 63 amphipaths. Biochemistry. 2009 Sep 15;48(36):8505-15. (PubMed)
Lee JH, Gaetz J, Bugarija B, Fernandes CJ, Snyder GE, Bush EC, Lahn BT. Chromatin analysis of occluded genes. Hum Mol Genet. 2009 Jul 15;18(14):2567-74. (PubMed)
Li X, Cassidy JJ, Reinke CA, Fischboeck S, Carthew RW. A microRNA imparts robustness against environmental fluctuation during development. Cell. 2009 Apr 17;137(2):273-82. (PubMed) (Download PDF)
Lin W, Hyeon T, Lanza GM, Zhang M, Meade TJ. Magnetic nanoparticles for early detection of cancer by Magnetic Resonance Imaging. MRS Bulletin 2009, 34, 441-448. (MRS Bulletin)
Liu J, Ghanim M, Xue L, Brown CD, Iossifov I, Angeletti C, Hua S, Nègre N, Ludwig M, Stricker T, Al-Ahmadie HA, Tretiakova M, Camp RL, Perera-Alberto M, Rimm DL, Xu T, Rzhetsky A, White KP. Analysis of Drosophila segmentation network identifies a JNK pathway factor overexpressed in kidney cancer. Science. 2009 Feb 27;323(5918):1218-22. (PubMed) (Download PDF)
Major JL, Meade TJ. Bioresponsive, cell-penetrating, and multimeric MR contrast agents. Acc Chem Res. 2009 Jul 21;42(7):893-903. (PubMed)
Marcheva B, Ramsey KM, Affinati A, Bass J. Clock genes and metabolic disease. J Appl Physiol. 2009 Nov;107(5):1638-46. (PubMed)
Meerschaert K, Tun MP, Remue E, De Ganck A, Boucherie C, Vanloo B, Degeest G, Vandekerckhove J, Zimmermann P, Bhardwaj N, Lu H, Cho W, Gettemans J. The PDZ2 domain of zonula occludens-1 and -2 is a phosphoinositide binding domain. Cell Mol Life Sci. 2009 Dec;66(24):3951-66. (PubMed)
Mukhopadhyay A, McGuire T, Peng CY, Kessler JA. Differential effects of BMP signaling on parvalbumin and somatostatin interneuron differentiation. Development. 2009 Aug;136(15):2633-42. (PubMed)
Nangia Y, Wangoo N, Sharma S, Wu JS, Dravid V, Shekhawat GS, Raman Suri R. Facile biosynthesis of phosphate capped gold nanoparticles by a bacterial isolate Stenotrophomonas maltophilia. Appl. Phys. Lett. 2009 94, 233901. (doi:10.1063/1.3141519)
Pedró Rosa LE, Reddy DR, Queener SF, Miller LW. Selective antifolates for chemically labeling proteins in mammalian cells. Chembiochem. 2009 Jun 15;10(9):1462-4. (PubMed)
Powers ET, Morimoto RI, Dillin A, Kelly JW, Balch WE. Biological and chemical approaches to diseases of proteostasis deficiency. Annu Rev Biochem. 2009;78:959-91. (PubMed)
Rajapakse HE, Reddy DR, Mohandessi S, Butlin NB, Miller LW. Luminescent Terbium Protein Labels for Time-Resolved Microscopy and Screening. Angew Chem Int Edit. 2009 Vol. 48 Issue 27:4990-4992. (InterScience)
Ramsey KM, Yoshino J, Brace CS, Abrassart D, Kobayashi Y, Marcheva B, Hong HK, Chong JL, Buhr ED, Lee C, Takahashi JS, Imai S, Bass J. Circadian clock feedback cycle through NAMPT-mediated NAD+ biosynthesis. Science. 2009 May 1;324(5927):651-4. (PubMed)
Sawardecker EN, Sales-Pardo M, Amaral, LAN. Detection of node group membership in networks with group overlap. 2009 Eur. Phys. J. B 67, 277-284. (EPJB)
Scruggs SB, Hinken AC, Thawornkaiwong A, Robbins J, Walker LA, de Tombe PP, Geenen DL, Buttrick PM, Solaro RJ. Ablation of ventricular myosin regulatory light chain phosphorylation in mice causes cardiac dysfunction in situ and affects neighboring myofilament protein phosphorylation. J Biol Chem. 2009 Feb 20;284(8):5097-106. (PubMed)
Shekhawat GS, Lambert MP, Sharma S, Velasco PT, Viola KL, Klein WL, Dravid VP. Soluble state high resolution atomic force microscopy study of Alzheimer's beta-amyloid oligomers. Appl Phys Lett. 2009 Nov 2;95(18):183701. (PubMed)
Skoko D, Li M, Huang Y, Mizuuchi M, Cai M, Bradley CM, Pease PJ, Xiao B, Marko JF, Craigie R, Mizuuchi K. Barrier-to-autointegration factor (BAF) condenses DNA by looping. Proc Natl Acad Sci U S A. 2009 Sep 29;106(39):16610-5. (PubMed)
Song Y, Xu X, MacRenaris KW, Zhang XQ, Mirkin CA, Meade TJ. Multimodal gadolinium-enriched DNA-gold nanoparticle conjugates for cellular imaging. Angew Chem Int Ed Engl. 2009;48(48):9143-7. (PubMed)
Spooner CJ, Cheng JX, Pujadas E, Laslo P, Singh H. A recurrent network involving the transcription factors PU.1 and Gfi1 orchestrates innate and adaptive immune cell fates. Immunity. 2009 Oct 16;31(4):576-86. (PubMed)
Strickland D, Yao X, Gawlak G, Rosen MK, Gardner KH, Sosnick TR. Rationally improving LOV domain-based photoswitches. Nat Methods. 2010 Jun 20. [Epub ahead of print] (PubMed)
Taimen P, Pfleghaar K, Shimi T, Möller D, Ben-Harush K, Erdos MR, Adam SA, Herrmann H, Medalia O, Collins FS, Goldman AE, Goldman RD. A progeria mutation reveals functions for lamin A in nuclear assembly, architecture, and chromosome organization. Proc Natl Acad Sci U S A. 2009 Dec:8; 106(49): 20788–20793. (PubMed)
Thurn KT, Paunesku T, Wu A, Brown EM, Lai B, Vogt S, Maser J, Aslam M, Dravid V, Bergan R, Woloschak GE. Labeling TiO2 nanoparticles with dyes for optical fluorescence microscopy and determination of TiO2-DNA nanoconjugate stability. Small. 2009 Jun;5(11):1318-25. (PubMed)
Tian F, Chen J, Bao S, Shi L, Liu X, Grossman R. A graph model based study on regulatory impacts of transcription factors of Drosophila melanogaster and comparison across species. Biochem Biophys Res Commun. 2009 Sep 4;386(4):559-62. (PubMed)
Tian F, Shah PK, Liu X, Negre N, Chen J, Karpenko O, White KP, Grossman RL. Flynet: a genomic resource for Drosophila melanogaster transcriptional regulatory networks. Bioinformatics. 2009 Nov 15;25(22):3001-4. (PubMed)
Tseng YY, Dundas J, Liang J. Predicting protein function and binding profile via matching of local evolutionary and geometric surface patterns. J Mol Biol. 2009 Mar 27;387(2):451-64. (PubMed)
Turner JR. Intestinal mucosal barrier function in health and disease. Nat Rev Immunol. 2009 Nov;9(11):799-809. (PubMed)
Venken KJ, Carlson JW, Schulze KL, Pan H, He Y, Spokony R, Wan KH, Koriabine M, de Jong PJ, White KP, Bellen HJ, Hoskins RA. Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster. Nat Methods. 2009 Jun;6(6):431-4. (PubMed)
Wu CI, Shen Y, Tang T. Evolution under canalization and the dual roles of microRNAs: a hypothesis. Genome Res. 2009 May;19(5):734-43. (PubMed)
Zhuang M, Calabrese MF, Liu J, Waddell MB, Nourse A, Hammel M, Miller DJ, Walden H, Duda DM, Seyedin SN, Hoggard T, Harper JW, White KP, Schulman BA. Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases. Mol Cell. 2009 Oct 9;36(1):39-50. (PubMed)
2010
Atkinson IC, Sonstegaard R, Pliskin NH, Thulborn KR. Vital signs and cognitive function are not affected by 23-sodium and 17-oxygen magnetic resonance imaging of the human brain at 9.4 T. J Magn Reson Imaging. 2010 Jul;32(1):82-7. (PubMed)
Cui J, Matsumoto K, Wang CY, Peter ME, Kozmin SA. Synthesis of a high-purity chemical library reveals a potent inducer of oxidative stress. Chembiochem. 2010 Jun 14;11(9):1224-7. (PubMed)
Decker RS, Rines AK, Nakamura S, Naik TJ, Wassertsrom JA, Ardehali H. Phosphorylation of contractile proteins in response to alpha- and beta-adrenergic stimulation in neonatal cardiomyocytes. Transl Res. 2010 Jan;155(1):27-34. (PubMed)
Farmer RL, Biddle MM, Nibbs AE, Huang X, Bergan RC, Scheidt, KA. Concise Syntheses of the Abyssinones and Discovery of New Inhibitors of Prostate Cancer and MMP-2 Expression. ACS Med. Chem. Lett. 2010, Publication Date (Web): Aug 4. (DOI: 10.1021/ml100110x)
Fu H, Chen H, Marko JF, Yan J. Two distinct overstretched DNA states. Nucleic Acids Res. 2010 Apr 30. [Epub ahead of print] (PubMed)
Fu Y, Dai Q, Zhang W, Ren J, Pan T, He C. The AlkB Domain of Mammalian ABH8 Catalyzes Hydroxylation of 5-Methoxycarbonylmethyluridine at the Wobble Position of tRNA. Angew Chem Int Ed Engl. 2010 Jun 25. [Epub ahead of print] (PubMed)
Gidalevitz T, Kikis EA, Morimoto RI. A cellular perspective on conformational disease: the role of genetic background and proteostasis networks. Curr Opin Struct Biol. 2010 Feb;20(1):23-32. (PubMed)
Glavaski-Joksimovic A, Virag T, Mangatu TA, McGrogan M, Wang XS, Bohn MC. Glial cell line-derived neurotrophic factor-secreting genetically modified human bone marrow-derived mesenchymal stem cells promote recovery in a rat model of Parkinson's disease. J Neurosci Res. 2010 Sep;88(12):2669-81. (PubMed)
Han Y, Chang QA, Virag T, West NC, George D, Castro MG, Bohn MC. Lack of humoral immune response to the tetracycline (Tet) activator in rats injected intracranially with Tet-off rAAV vectors. Gene Ther. 2010 May;17(5):616-25. (PubMed)
Harney AS, Meade TJ. Molecular imaging of in vivo gene expression. Review. Future Medicinal Chemistry. 2010. Mar; Vol. 2, No. 3, pp 503-19. (future-science.com)
Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, Glass CK. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell. 2010 May 28;38(4):576-89. (PubMed)
Hu F, Joshi HM, Dravid VP, Meade TJ. High-performance nanostructured MR contrast probes. Nanoscale. 2010 Aug 6. [Epub ahead of print] (PubMed)
Jung HJ, Shim JS, Lee J, Song YM, Park KC, Choi SH, Kim ND, Yoon JH, Mungai PT, Schumacker PT, Kwon HJ. Terpestacin inhibits tumor angiogenesis by targeting UQCRB of mitochondrial complex III and suppressing hypoxia-induced reactive oxygen species production and cellular oxygen sensing. J Biol Chem. 2010 Apr 9;285(15):11584-95. (PubMed)
Kawamura R, Pope LH, Christensen MO, Sun M, Terekhova K, Boege F, Mielke C, Andersen AH, Marko JF. Mitotic chromosomes are constrained by topoisomerase II-sensitive DNA entanglements. J Cell Biol. 2010 Mar 8;188(5):653-63. (PubMed)
Kim AM, Vogt S, O'Halloran TV, Woodruff TK. Zinc availability regulates exit from meiosis in maturing mammalian oocytes. Nat Chem Biol. 2010 Aug 8. [Epub ahead of print] (PubMed)
Lee H, Suzuki M, Cui J, Kozmin SA. Synthesis of an azide-tagged library of 2,3-dihydro-4-quinolones. J Org Chem. 2010 Mar 5;75(5):1756-9. (PubMed)
Lu A, Atkinson IC, Claiborne TC, Damen FC, Thulborn KR. Quantitative sodium imaging with a flexible twisted projection pulse sequence. Magn Reson Med. 2010 Jun;63(6):1583-93. (PubMed)
Lu X, Shapiro JA, Ting CT, Li Y, Li C, Xu J, Huang H, Cheng YJ, Greenberg AJ, Li SH, Wu ML, Shen Y, Wu CI. Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility. Genome Res. 2010 Aug;20(8):1097-102. (PubMed)
Lu J, Shen Y, Carthew RW, Wang SM, Wu CI. Reply to “Evolutionary flux of canonical microRNAs and mirtrons in Drosophila” Nature Genetics. 42, 9-10, 2010. (Nature Genetics)
Manus LM, Mastarone DJ, Waters EA, Zhang XQ, Schultz-Sikma EA, Macrenaris KW, Ho D, Meade TJ. Gd(III)-nanodiamond conjugates for MRI contrast enhancement. Nano Lett. 2010 Feb 10;10(2):484-9. (PubMed)
Marcheva B, Ramsey KM, Buhr ED, Kobayashi Y, Su H, Ko CH, Ivanova G, Omura C, Mo S, Vitaterna MH, Lopez JP, Philipson LH, Bradfield CA, Crosby SD, Jebailey L, Wang X, Takahashi JS, Bass J. Disruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes. Nature. 2010 Jul 29;466(7306):627-31. (PubMed)
Maury E, Ramsey KM, Bass J. Circadian rhythms and metabolic syndrome: from experimental genetics to human disease. Circ Res. 2010 Feb 19;106(3):447-62. (PubMed)
Nègre N, Brown CD, Shah PK, Kheradpour P, Morrison CA, Henikoff JG, Feng X, Ahmad K, Russell S, White RA, Stein L, Henikoff S, Kellis M, White KP. A comprehensive map of insulator elements for the Drosophila genome. PLoS Genet. 2010 Jan 15;6(1):e1000814. (PubMed)
Potapov A, Song Y, Meade TJ, Goldfarb D, Astashkin AV, Raitsimring A. Distance measurements in model bis-Gd(III) complexes with flexible "bridge". Emulation of biological molecules having flexible structure with Gd(III) labels attached. J Magn Reson. 2010 Jul;205(1):38-49. (PubMed)
Puckelwartz MJ, Kessler EJ, Kim G, Dewitt MM, Zhang Y, Earley JU, Depreux FF, Holaska J, Mewborn SK, Pytel P, McNally EM. Nesprin-1 mutations in human and murine cardiomyopathy. J Mol Cell Cardiol. 2010 Apr;48(4):600-8. (PubMed)
Rajapakse HE, Gahlaut N, Mohandessi S, Yu D, Turner JR, Miller LW. Time-resolved luminescence resonance energy transfer imaging of protein-protein interactions in living cells. Proc Natl Acad Sci U S A. 2010 Aug 3;107(31):13582-7. (PubMed)
Saikia M, Fu Y, Pavon-Eternod M, He C, Pan T. Genome-wide analysis of N1-methyl-adenosine modification in human tRNAs. RNA. 2010 Jul;16(7):1317-27. (PubMed)
Solaro RJ, Warren CM, Scruggs SB. Why is it important to analyze the cardiac sarcomere subproteome? Expert Rev Proteomics. 2010 Jun;7(3):311-4. (PubMed)
Strickland D, Yao X, Gawlak G, Rosen MK, Gardner KH, Sosnick TR. Rationally improving LOV domain-based photoswitches. Nat Methods. 2010 Aug;7(8):623-6. (PubMed)
Su H, Marcheva B, Meng S, Liang FA, Kohsaka A, Kobayashi Y, Xu AW, Bass J, Wang X. Gamma-protocadherins regulate the functional integrity of hypothalamic feeding circuitry in mice. Dev Biol. 2010 Mar 1;339(1):38-50. (PubMed)
Tang T, Kumar S, Shen Y, Lu J, Wu ML, Shi S, Li WH, Wu CI. Adverse interactions between micro-RNAs and target genes from different species. Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):12935-40. PMID: (PubMed)
Waypa GB, Marks JD, Guzy R, Mungai PT, Schriewer J, Dokic D, Schumacker PT. Hypoxia triggers subcellular compartmental redox signaling in vascular smooth muscle cells. Circ Res. 2010 Feb 19;106(3):526-35. (PubMed)
Xiao B, Johnson RC, Marko JF. Modulation of HU-DNA interactions by salt concentration and applied force. Nucleic Acids Res. 2010 May 23. [Epub ahead of print] (PubMed)