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Lee SM, Song Y, Hong BJ, MacRenaris KW, Mastarone DJ, O'Halloran TV, Meade TJ, Nguyen ST. Modular polymer-caged nanobins as a theranostic platform with enhanced magnetic resonance relaxivity and pH-responsive drug release. Angew Chem Int Ed Engl. 2010 Dec 17;49(51):9960-4. (PubMed)

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Zhuang M, Calabrese MF, Liu J, Waddell MB, Nourse A, Hammel M, Miller DJ, Walden H, Duda DM, Seyedin SN, Hoggard T, Harper JW, White KP, Schulman BA. Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases. Mol Cell. 2009 Oct 9;36(1):39-50. (PubMed)

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Amaral LA. A truer measure of our ignorance. Proc Natl Acad Sci U S A. 2008 May 13;105(19):6795-6. (PubMed)

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Lu J, Fu Y, Kumar S, Shen Y, Zeng K, Xu A, Carthew R, Wu CI. Adaptive evolution of newly emerged micro-RNA genes in Drosophila. Mol Biol Evol. 2008 May;25(5):929-38. (PubMed) (Download PDF)

Lu J, Shen Y, Wu Q, Kumar S, He B, Shi S, Carthew RW, Wang SM, Wu CI. The birth and death of microRNA genes in Drosophila. Nat Genetics 2008 Mar;40(3):351-5. (PubMed) (Download PDF)

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Shah PK, Tripathi LP, Jensen LJ, Gahnim M, Mason C, Furlong EE, Rodrigues V, White KP, Bork P, Sowdhamini R. Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families. Gene. 2008 Jan 15;407(1-2):199-215. (PubMed)

Shimi T, Pfleghaar K, Kojima S, Pack CG, Solovei I, Goldman AE, Adam SA, Shumaker DK, Kinjo M, Cremer T, Goldman RD. The A- and B-type nuclear lamin networks: microdomains involved in chromatin organization and transcription. Genes Dev. 2008 Dec 15;22(24):3409-21. (PubMed)

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Song Y, Kohlmeir EK, Meade TJ. Synthesis of multimeric MR contrast agents for cellular imaging. J Am Chem Soc. 2008 May 28;130(21):6662-3. (PubMed)

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Zhou D, Xue J, Lai JC, Schork NJ, White KP, Haddad GG. Mechanisms underlying hypoxia tolerance in Drosophila melanogaster: hairy as a metabolic switch. PLoS Genet. 2008 Oct;4(10):e1000221. (PubMed)

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Dai Q, Fong R, Saikia M, Stephenson D, Yu YT, Pan T, Piccirilli JA. Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine. Nucleic Acids Res. 2007;35(18):6322-9. (PubMed)

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Kohsaka A, Laposky AD, Ramsey KM, Estrada C, Joshu C, Kobayashi Y, Turek FW, Bass J. High-fat diet disrupts behavioral and molecular circadian rhythms in mice. Cell Metab. 2007 Nov;6(5):414-21. (PubMed)

Maier TM, Casey MS, Becker RH, Dorsey CW, Glass EM, Maltsev N, Zahrt TC, Frank DW. Identification of Francisella tularensis Himar1-Based Transposon Mutants Defective for Replication in Macrophages. Infect Immun, 2007 75(11): 5376-89. (PubMed)

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Sulakhe D, D'Souza M, Syed M, Alexis RA, Zhang Y, Glass EM, Romine MF, Maltsev N. GNARE: a grid-based server for the analysis of user submitted Genomes. Nucleic Acids Research, 2007, 1–6. (Download PDF)

Zhou D, Xue J, Chen J, Morcillo P, Lambert JD, White KP, Haddad GG. Experimental selection for Drosophila survival in extremely low O2 environment. PLoS One. 2007 May 30;2(5):e490. (PubMed)

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Ghanim M, White KP. Genotyping method to screen individual Drosophila embryos prior to RNA extraction. Biotechniques. 2006 Oct;41(4):414, 416, 418. (PubMed)

Maltsev N, Glass E, Sulakhe D, Rodriguez A, Syed MH, Bompada T, Zhang Y, D'Souza M. UMA2--grid-based high-throughput analysis of genomes and metabolic pathways. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D369-72. (PubMed)

Moorman C, Sun LV, Wang J, de Wit E, Talhout W, Ward LD, Greil F, Lu XJ, White KP, Bussemaker HJ, van Steensel B. Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster. Proc Natl Acad Sci U S A. 2006 Aug 8;103(32):12027-32. (PubMed)

Saikia M, Dai Q, Decatur WA, Fournier MJ, Piccirilli JA, Pan T. A systematic, ligation-based approach to study RNA modifications. RNA. 2006 Nov;12(11):2025-33. (PubMed) (Download PDF)

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