February 3, 2020 | Jola Glotzer
Cite us — we’ll “cite” you back!
Thirty-one new publications attributed to fifteen CBC Awards contribute to a total of 2496 publications that are the result of CBC-sponsored research to date
In mid-December 2019, we reported on the new CBC funding-attributed scientific publication published during September-October 2019. Since then, we have become aware of additional thirty-one new publications acknowledging CBC support. These publications are a result of CBC-sponsored research linked to fifteen CBC Awards: two Catalyst Awards, one Infrastructure, three Lever Awards, one Postdoctoral Research Award, five Recruitment Resources Fund Awards, two CBC Scholar Awards and one Spark. To date, 2496 research papers in total have been published as a result of CBC-funding!
Congratulations to all authors involved in the published research!
Congratulations to all CBC awardees and community members who have recently published the results of their CBC-sponsored research:
CBC Catalyst Award, 2011
PIs: Terry Vanden Hoek, UIC & Alan Leff, UChicago
- Li J, Zhu X, Wang H, Lee C, Chen SJ, Qian Y, Han M, Bunney R, Beiser DG, Vanden Hoek TL. Akt1-mediated CPR cooling protection targets regulators of metabolism, inflammation and contractile function in mouse cardiac arrest. PLoS One. 2019 Aug 9;14(8):e0220604. eCollection 2019. (PubMed)
CBC Catalyst Award, 2015
PIs: Bryan Dickinson, UChicago & David Gius, NU
- Vidimar V, Beilhartz GL, Park M, Biancucci M, Kieffer MB, Gius DR, Melnyk RA, Satchell KJF. Inhibition of tumor growth by a novel engineered chimeric toxin that cleaves activated mutant and wild-type RAS. BioRvix. Posted December 18, 2019. (biorxiv.org)
CBC Infrastructure Award, 2014
PIs: Mitra Dutta & Richard Minshall, UIC
(A parts of the published work was conducted in the facility funded by the CBC Infrastructure Award to UIC)
- Hu WY, Hu DP, Xie L, Birch LA, Prins GS. Isolation of Stem-like Cells from 3-Dimensional Spheroid Cultures. J Vis Exp. 2019 Dec 13;(154). (PubMed)
CBC Lever Award, 2009
PIs: Sergey Kozmin, UChicago, Jie Liang, UIC & Karl Scheidt, NU
- Ji Y, Mishra RK, Davuluri RV. In silico analysis of alternative splicing on drug-target gene interactions. Sci Rep. 2020 Jan 10;10(1):134. (PubMed)
CBC Lever Award, 2011
PIs: Joel Collier, UChicago, David Eddington, UIC, Chad Mirkin & Milan Mrksich, NU
- Cabezas MD, Meckes B, Mirkin CA, Mrksich M. Subcellular Control over Focal Adhesion Anisotropy, Independent of Cell Morphology, Dictates Stem Cell Fate. ACS Nano. 2019 Oct 22;13(10):11144-11152. (PubMed)
CBC Lever Award, 2015
PIs: Vadim Backman, NU, Lucy Godley, UChicago & Jack Kaplan, UIC
- Erbaş A, Marko JF. How do DNA-bound proteins leave their binding sites? The role of facilitated dissociation. Curr Opin Chem Biol. 2019 Dec;53:118-124. Review. (PubMed)
- Garwin SA, Kelley MS, Sue AC, Que EL, Schatz GC, Woodruff TK, O’Halloran TV. Interrogating Intracellular Zinc Chemistry with a Long Stokes Shift Zinc Probe ZincBY-4. J Am Chem Soc. 2019 Oct 23;141(42):16696-16705. (PubMed)
- Marko JF. Physics and Biology (of Chromosomes). J Mol Biol. 2019 Dec 20. [Epub ahead of print] (PubMed)
- Miodragović Đ, Merlino A, Swindell EP, Bogachkov A, Ahn RW, Abuhadba S, Ferraro G, Marzo T, Mazar AP, Messori L, O’Halloran TV. Arsenoplatin-1 Is a Dual Pharmacophore Anticancer Agent. J Am Chem Soc. 2019 Apr 24;141(16):6453-6457. (PubMed)
- Renn JP, Bhattacharyya S, Bai H, He C, Li H, Oberhauser AF, Marko JF, Makarov DE, Matouschek A. Mechanical unfolding of spectrin reveals a super-exponential dependence of unfolding rate on force. Sci Rep. 2019 Jul 31;9(1):11101. (PubMed)
- Viny AD, Bowman RL, Liu Y, Lavallée VP, Eisman SE, Xiao W, Durham BH, Navitski A, Park J, Braunstein S, Alija B, Karzai A, Csete IS, Witkin M, Azizi E, Baslan T, Ott CJ, Pe’er D, Dekker J, Koche R, Levine RL. Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation. Cell Stem Cell. 2019 Nov 7;25(5):682-696.e8. (PubMed)
- Virk RKA, Wu W, Almassalha LM, Bauer GM, Li Y, VanDerway D, Frederick J, Zhang D, Eshein A, Roy HK, Szleifer I, Backman V. Disordered chromatin packing regulates phenotypic plasticity. Sci Adv. 2020 Jan 8;6(2):eaax6232. eCollection 2020 Jan. (PubMed)
CBC Recruitment Resources Fund Award, 2006
PI: Kevin White, Tempus, previously at UChicago; CBC Senior Investigator
- Mohan LS, Khan AU, Zhang B, Quan VL, Shi K, Panah E, Isales MC, Yazdan P, Zhang Y, Beaubier N, Taxter TJ, Compres EV, Kim D, White KP, Gerami P. Retrospective Cohort: Genomic Differences Between Pigmented Spindle Cell Nevi of Reed and Reed-Like Melanomas. Am J Dermatopathol. 2020 Jan 29. [Epub ahead of print] (PubMed)
- Song SJ, Sanders JG, Delsuc F, Metcalf J, Amato K, Taylor MW, Mazel F, Lutz HL, Winker K, Graves GR, Humphrey G, Gilbert JA, Hackett SJ, White KP, Skeen HR, Kurtis SM, Withrow J, Braile T, Miller M, McCracken KG, Maley JM, Ezenwa VO, Williams A, Blanton JM, McKenzie VJ, Knight R. Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats. mBio. 2020 Jan 7;11(1). (PubMed)
CBC Recruitment Resources Fund Award, 2010
PI: Neil Kelleher, NU; CBC Senior Investigator
- Doubleday PF, Fornelli L, Kelleher NL. Elucidating Proteoform Dynamics Underlying the Senescence Associated Secretory Phenotype. J Proteome Res. 2020 Jan 28. [Epub ahead of print] (PubMed)
- Fornelli L, Srzentić K, Toby TK, Doubleday PF, Huguet R, Mullen C, Melani RD, Dos Santos Seckler H, DeHart CJ, Weisbrod CR, Durbin KR, Greer JB, Early BP, Fellers RT, Zabrouskov V, Thomas P, Compton PD, Kelleher NL. Thorough performance evaluation of 213 nm ultraviolet photodissociation for top-down proteomics. Mol Cell Proteomics. 2019 Dec 30. [Epub ahead of print] (PubMed)
- Henning NF, LeDuc RD, Even KA, Laronda MM. Proteomic analyses of decellularized porcine ovaries identified new matrisome proteins and spatial differences across and within ovarian compartments. Sci Rep. 2019 Dec 27;9(1):20001. (PubMed)
- Kafader JO, Melani RD, Schachner LF, Ives A, Patrie SM, Kelleher NL, Compton PD. Native vs Denatured: An in Depth Investigation of Charge State and Isotope Distributions. J Am Soc Mass Spectrom. 2020 Jan 23. [Epub ahead of print] (PubMed)
- Montaser R, Kelleher NL. Discovery of the Biosynthetic Machinery for the Stravidins, Biotin Antimetabolites. ACS Chem Biol. 2019 Dec 30. [Epub ahead of print] (PubMed)
- Park HM, Winton VJ, Drader JJ, Manalili Wheeler S, Lazar GA, Kelleher NL, Liu Y, Tran JC, Compton PD. A Novel Interface for High-Throughput Analysis of Biotherapeutics by Electrospray Mass Spectrometry. Anal Chem. 2019 Dec 27. [Epub ahead of print] (PubMed)
- Winer B, Edgel KA, Zou X, Sellau J, Hadiwidjojo S, Garver LS, McDonough CE, Kelleher NL, Thomas PM, Villasante E, Ploss A, Gerbasi VR. Identification of Plasmodium falciparum proteoforms from liver stage models. Malar J. 2020 Jan 7;19(1):10. (PubMed)
CBC Recruitment Resources Fund Award, 2010
PI: Alex Ruthenburg, UChicago; CBC Junior Investigator
- Grzybowski AT, Shah RN, Richter WF, Ruthenburg AJ. Native internally calibrated chromatin immunoprecipitation for quantitative studies of histone post-translational modifications. Nat Protoc. 2019 Dec;14(12):3275-3302. (PubMed)
CBC Recruitment Resources Fund Award, 2011
PI: Daniel Dombeck, NU; CBC Junior Investigator
- Issa JB, Tocker G, Hasselmo ME, Heys JG, Dombeck DA. Navigating Through Time: A Spatial Navigation Perspective on How the Brain May Encode Time. Annu Rev Neurosci. 2020 Jan 21. [Epub ahead of print] (PubMed)
CBC Recruitment Resources Fund Award, 2011
PI: Michael Rust, UChicago; CBC Junior Investigator
- Francis ML, Ricketts SN, Farhadi L, Rust MJ, Das M, Ross JL, Robertson-Anderson RM. Non-monotonic dependence of stiffness on actin crosslinking in cytoskeleton composites. Soft Matter. 2019 Nov 28;15(44):9056-9065. (PubMed)
CBC Postdoctoral Research Award, 2015
PIs: Joshua Broussard (postdoc) & Kathleen Green, NU
- Broussard JA, Koetsier JL, Green KJ. Desmosomes pattern cell mechanics to govern epidermal tissue form and function. bioRxiv preprint first posted online Jan. 21, 2020. (doi.org)
CBC Scholar Award, 2014
Scholar: Aleksandar Antanasijevic/PI: Michael Caffrey, UIC
- Antanasijevic A, Durst MA, Lavie A, Caffrey M. Identification of a pH sensor in Influenza hemagglutinin using X-ray crystallography. J Struct Biol. 2020 Jan 1;209(1):107412. (PubMed)
CBC Scholar Award, 2014
Scholar: John Zimmerman/PI: Bozhi Tian, UC
- Zimmerman JF, Tian B. Multifunctional optofluidic brain probes. Nat Biomed Eng. 2019 Aug;3(8):596-597. (PubMed)
CBC Spark Award, 2009
PIs: Charles Clevenger, Vinayak Dravid & Thomas O’Halloran, NU & Jonathan Silverstein, UChicago
(Parts of the published research were conducted in the facility funded by the CBC Spark Award)
- Lilley LM, Kamper S, Caldwell M, Chia ZK, Ballweg D, Vistain L, Krimmel J, Mills TA, MacRenaris K, Lee P, Waters EA, Meade TJ. Self-Immolative Activation of β-Galactosidase-Responsive Probes for In Vivo MR Imaging in Mouse Models. Angew Chem Int Ed Engl. 2020 Jan 2;59(1):388-394. (PubMed)
- Quattrocelli M, Zelikovich AS, Jiang Z, Peek CB, Demonbreun AR, Kuntz NL, Barish GD, Haldar SM, Bass J, McNally EM. Pulsed glucocorticoids enhance dystrophic muscle performance through epigenetic-metabolic reprogramming. JCI Insight. 2019 Dec 19;4(24). (PubMed)
- Robison L, Zhang L, Drout RJ, Li P, Haney CR, Brikha A, Noh H, Mehdi BL, Browning ND, Dravid VP, Cui Q, Islamoglu T, Farha OK. A Bismuth Metal–Organic Framework as a Contrast Agent for X-ray Computed Tomography. ACS Appl. Bio Mater. 2019, 2, 3, 1197-1203. (pubs.acs.org)
- Walker DA, Hedrick JL, Mirkin CA. Rapid, large-volume, thermally controlled 3D printing using a mobile liquid interface. Science. 2019 Oct 18;366(6463):360-364. (PubMed)