CBC-Attributed Research Publications 2015

Scroll down or select a different year:

2021  I  2020  I  2019  I  2018  I  2017  I  2016  I  2015  I  2014  I  2013  I  2012  I  2011  I  2010  I  2009  I  2008  I  2007  I  2006
2015

Abate F, Todaro M, van der Krogt JA, Boi M, Landra I, Machiorlatti R, Tabbò F, Messana K, Abele C, Barreca A, Novero D, Gaudiano M, Aliberti S, Di Giacomo F, Tousseyn T, Lasorsa E, Crescenzo R, Bessone L, Ficarra E, Acquaviva A, Rinaldi A, Ponzoni M, Longo DL, Aime S, Cheng M, Ruggeri B, Piccaluga PP, Pileri S, Tiacci E, Falini B, Pera-Gresely B, Cerchietti L, Iqbal J, Chan WC, Shultz LD, Kwee I, Piva R, Wlodarska I, Rabadan R, Bertoni F, Inghirami G; European T-cell Lymphoma Study Group. A novel patient-derived tumorgraft model with TRAF1-ALK anaplastic large-cell lymphoma translocation. Leukemia. 2015 Jun;29(6):1390-401. (PubMed)

AbouElfetouh A, Kuhn ML, Hu LI, Scholle MD, Sorensen DJ, Sahu AK, Becher D, Antelmann H, Mrksich M, Anderson WF, Gibson BW, Schilling B, Wolfe AJ. The E. coli sirtuin CobB shows no preference for enzymatic and nonenzymatic lysine acetylation substrate sites. Microbiologyopen. 2015 Feb;4(1):66-83. (PubMed)

Aggarwal C, Federle MJ. Peptide pheromones and their protein receptors: Cellular signaling in Gram-positive bacteria. In: Molecular Life Sciences: An Encyclopedic Reference. Ed. Ellis Bell. Springer 2015. (springer)

Aggarwal C, Jimenez JC, Lee H, Chlipala GE, Ratia K, Federle MJ. Identification of Quorum-Sensing Inhibitors Disrupting Signaling between Rgg and Short Hydrophobic Peptides in Streptococci. MBio. 2015 May 12;6(3). (PubMed)

Akbarian S, Liu C, Knowles JA, (…), White KP, (…). The PsychENCODE project. Nat Neurosci. 2015 Nov 25;18(12):1707-12. doi: 10.1038/nn.4156. No abstract available. (PubMed)

Albright JC, Henke MT, Soukup AA, McClure RA, Thomson RJ, Keller NP, Kelleher NL. Large-Scale Metabolomics Reveals A Complex Response of Aspergillus nidulans to Epigenetic Perturbation. ACS Chem Biol. 2015 Jun 19;10(6):1535-41. (PubMed)

Altman RB. Predicting cancer drug response: advancing the DREAM. Cancer Discov. 2015 Mar;5(3):237-8. (PubMed)

Amiram M, Haimovich AD, Fan C, Wang YS, Aerni HR, Ntai I, Moonan DW, Ma NJ, Rovner AJ, Hong SH, Kelleher NL, Goodman AL, Jewett MC, Söll D, Rinehart J, Isaacs FJ. Evolution of translation machinery in recoded bacteria enables multi-site incorporation of nonstandard amino acids. Nat Biotechnol. 2015 Dec;33(12):1272-1279. (PubMed)

Aprison EZ, Ruvinsky I. Sex Pheromones of C. elegans Males Prime the Female Reproductive System and Ameliorate the Effects of Heat Stress. PLoS Genet. 2015 Dec 8;11(12):e1005729. eCollection 2015 Dec. (PubMed)

Arble DM, Bass J, Behn CD, Butler MP, Challet E, Czeisler C, Depner CM, Elmquist J, Franken P, Grandner MA, Hanlon EC, Keene AC, Joyner MJ, Karatsoreos I, Kern PA, Klein S, Morris CJ, Pack AI, Panda S, Ptacek LJ, Punjabi NM, Sassone-Corsi P, Scheer FA, Saxena R, Seaquest ER, Thimgan MS, Van Cauter E, Wright KP. Impact of Sleep and Circadian Disruption on Energy Balance and Diabetes: A Summary of Workshop Discussions. Sleep. 2015 Dec 1;38(12):1849-60. (PubMed)

Auyeung E, Morris W, Mondloch JE, Hupp JT, Farha OK, Mirkin CA. Controlling structure and porosity in catalytic nanoparticle superlattices with DNA. J Am Chem Soc. 2015 Feb 4;137(4):1658-62. Erratum in: J Am Chem Soc. 2015 Mar 25;137(11):3993. (PubMed)

Bailey KA, Savic D, Zielinski M, Park SY, Wang LJ, Witkowski P, Brady M, Hara M, Bell GI, Nobrega MA. Evidence of non-pancreatic beta cell-dependent roles of Tcf7l2 in the regulation of glucose metabolism in mice. Hum Mol Genet. 2015 Mar 15;24(6):1646-54. (PubMed)

Bang C, Cheng J. Dynamic interplay of spectrosome and centrosome organelles in asymmetric stem cell divisions. PLoS One. 2015 Apr 7;10(4):e0123294. (PubMed)

Barnaby SN, Thaner RV, Ross MB, Brown KA, Schatz GC, Mirkin CA. Modular and Chemically Responsive Oligonucleotide “Bonds” in Nanoparticle Superlattices. J Am Chem Soc. 2015 Oct 28;137(42):13566-71. (PubMed)

Baumgarten SC, Convissar SM, Musa Zamah A, Fierro MA, Winston NJ, Scoccia B, Stocco C. FSH Regulates IGF2 Expression in Human Granulosa Cells in an AKT-dependent Manner. J Clin Endocrinol Metab. 2015 Aug;100(8):E1046-55. (PubMed)

Berth S, Caicedo HH, Sarma T, Morfini G, Brady ST. Internalization and Axonal Transport of the HIV Glycoprotein gp120. ASN Neuro. 2015 Jan 30;7(1):1-15. (PubMed)

Bishop JR, Najjar F, Rubin LH, Guter SJ, Owley T, Mosconi MW, Jacob S, Cook EH. Escitalopram pharmacogenetics: CYP2C19 relationships with dosing and clinical outcomes in autism spectrum disorder. Pharmacogenet Genomics. 2015 Nov;25(11):548-54. (PubMed)

Bok JW, Ye R, Clevenger KD, Mead D, Wagner M, Krerowicz A, Albright JC, Goering AW, Thomas PM, Kelleher NL, Keller NP, Wu CC. Fungal artificial chromosomes for mining of the fungal secondary metabolome. BMC Genomics. 2015 Apr 29;16(1):343. (PubMed)

Borowska MT, Dominik PK, Anghel SA, Kossiakoff AA, Keenan RJ. A YidC-like Protein in the Archaeal Plasma Membrane. Structure. 2015 Sep 1;23(9):1715-24. (PubMed)

Brandvold KR, Morimoto RI. The Chemical Biology of Molecular Chaperones-Implications for Modulation of Proteostasis. Review. J Mol Biol. 2015 Sep 11;427(18):2931-47. (PubMed)

Brennand K, Savas JN, Kim Y, Tran N, Simone A, Hashimoto-Torii K, Beaumont KG, Kim HJ, Topol A, Ladran I, Abdelrahim M, Matikainen-Ankney B, Chao SH, Mrksich M, Rakic P, Fang G, Zhang B, Yates JR 3rd, Gage FH. Phenotypic differences in hiPSC NPCs derived from patients with schizophrenia. Mol Psychiatry. 2015 Mar;20(3):361-8. (PubMed)

Briley WE, Bondy MH, Randeria PS, Dupper TJ, Mirkin CA. Quantification and real-time tracking of RNA in live cells using Sticky-flares. Proc Natl Acad Sci U S A. 2015 Aug 4;112(31):9591-5. (PubMed)

Brodin JD, Auyeung E, Mirkin CA. DNA-mediated engineering of multicomponent enzyme crystals. Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4564-9. (PubMed)

Brodin JD, Sprangers AJ, McMillan JR, Mirkin CA. DNA-Mediated Cellular Delivery of Functional Enzymes. J Am Chem Soc. 2015 Dec 2;137(47):14838-41. Erratum in: J Am Chem Soc. 2016 Jan 13;138(1):459. (PubMed)

Brown EL, Below JE, Fischer RS, Essigmann HT, Hu H, Huff C, Robinson DA, Petty LE, Aguilar D, Bell GI, Hanis CL. Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas. PLoS One. 2015 Nov 16;10(11):e0142130. eCollection 2015. (PubMed)

Brown MS, Grubb J, Zhang A, Rust MJ, Bishop DK. Small Rad51 and Dmc1 Complexes Often Co-occupy Both Ends of a Meiotic DNA Double Strand Break. PLoS Genet. 2015 Dec 31;11(12):e1005653. eCollection 2015 Dec. (PubMed)

Calabrese CM, Merkel TJ, Briley WE, Randeria PS, Narayan SP, Rouge JL, Walker DA, Scott AW, Mirkin CA. Biocompatible infinite-coordination-polymer nanoparticle-nucleic-acid conjugates for antisense gene regulation. Angew Chem Int Ed Engl. 2015 Jan 7;54(2):476-80. (PubMed)

Carmody D, Beca FA, Bell CD, Hwang JL, Dickens JT, Devine NA, Mackay DJ, Temple IK, Hays LR, Naylor RN, Philipson LH, Greeley SA. Role of noninsulin therapies alone or in combination in chromosome 6q24-related transient neonatal diabetes: sulfonylurea improves but does not always normalize insulin secretion. Diabetes Care. 2015 Jun;38(6):e86-7. (PubMed)

Carmody D, Lindauer KL, Naylor RN. Adolescent non-adherence reveals a genetic cause for diabetes. Diabet Med. 2015 Jun;32(6):e20-3. (PubMed)

Carmody D, Naylor RN, Philipson LH. Insulin dosing in pediatric diabetic ketoacidosis: where to start? JAMA. 2015 Jun 9;313(22):2274-5. (PubMed)

Carmody D, Park SY, Ye H, Perrone ME, Alkorta-Aranburu G, Highland HM, Hanis CL, Philipson LH, Bell GI, Greeley SA. Continued lessons from the INS gene: an intronic mutation causing diabetes through a novel mechanism. J Med Genet. J Med Genet. 2015 Sep;52(9):612-6. (PubMed)

Carney CE, Lenov IL, Baker CJ, MacRenaris KW, Eckermann AL, Sligar SG, Meade TJ. Nanodiscs as a Modular Platform for Multimodal MR-Optical Imaging. Bioconjug Chem. 2015 May 20;26(5):899-905. (PubMed)

Chang JC, Jimenez JC, Federle MJ. Induction of a quorum sensing pathway by environmental signals enhances group A streptococcal resistance to lysozyme. Mol Microbiol. 2015 Sep;97(6):1097-113. (PubMed)

Chang YG, Cohen SE, Phong C, Myers WK, Kim YI, Tseng R, Lin J, Zhang L, Boyd JS, Lee Y, Kang S, Lee D, Li S, Britt RD, Rust MJ, Golden SS, LiWang A. A protein fold switch joins the circadian oscillator to clock output in cyanobacteria. Science. 2015 Jul 17;349(6245):324-8. (PubMed)

Check CT, Jang KP, Schwamb CB, Wong AS, Wang MH, Scheidt KA. Ferrocene-based planar chiral imidazopyridinium salts for catalysis. Angew Chem Int Ed Engl. 2015 Mar 27;54(14):4264-8. (PubMed)

Cheesborough JE, Smith LH, Kuiken TA, Dumanian GA. Targeted muscle reinnervation and advanced prosthetic arms. Semin Plast Surg. 2015 Feb;29(1):62-72. (PubMed)

Chen GF, Sudhahar V, Youn SW, Das A, Cho J, Kamiya T, Urao N, McKinney RD, Surenkhuu B, Hamakubo T, Iwanari H, Li S, Christman JW, Shantikumar S, Angelini GD, Emanueli C, Ushio-Fukai M, Fukai T. Copper Transport Protein Antioxidant-1 Promotes Inflammatory Neovascularization via Chaperone and Transcription Factor Function. Sci Rep. 2015 Oct 6;5:14780. (PubMed)

Chen PC, Liu G, Zhou Y, Brown KA, Chernyak N, Hedrick JL, He S, Xie Z, Lin QY, Dravid VP, O’Neill-Slawecki SA, Mirkin CA. Tip-Directed Synthesis of Multimetallic Nanoparticles. J Am Chem Soc. 2015 Jul 22;137(28):9167-73. (PubMed)

Chen R, Wei Q, Zhan X, Zhong X, Sutcliffe JS, Cox NJ, Cook EH, Li C, Chen W, Li B. A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis. Bioinformatics. 2015 May 1;31(9):1452-9. (PubMed)

Chen S, Paunesku T, Yuan Y, Jin Q, Hornberger B, Flachenecker C, Lai B, Brister K, Jacobsen C, Woloschak G, Vogt S. The Bionanoprobe: Synchrotron-based Hard X-ray Fluorescence Microscopy for 2D/3D Trace Element Mapping. Micros Today. 2015 May;23(3):26-29. (PubMed)

Chen X, Cui J, Yan Z, Zhang H, Chen X, Wang N, Shah P, Deng F, Zhao C, Geng N, Li M, Denduluri SK, Haydon RC, Luu HH, Reid RR, He TC. Sustained high level transgene expression in mammalian cells mediated by the optimized piggyBac transposon system. Genes Dis. 2015 Mar;2(1):96-105. (PubMed)

Chen X, Velmurugu Y, Zheng G, Park B, Shim Y, Kim Y, Liu L, Van Houten B, He C, Ansari A, Min JH. Kinetic gating mechanism of DNA damage recognition by Rad4/XPC. Nat Commun. 2015 Jan 6;6:5849. (PubMed)

Chinen AB, Guan CM, Ferrer JR, Barnaby SN, Merkel TJ, Mirkin CA. Nanoparticle Probes for the Detection of Cancer Biomarkers, Cells, and Tissues by Fluorescence. Chem Rev. 2015 Oct 14;115(19):10530-74. Review. (PubMed)

Chinen AB, Guan CM, Mirkin CA. Spherical nucleic acid nanoparticle conjugates enhance G-quadruplex formation and increase serum protein interactions. Angew Chem Int Ed Engl. 2015 Jan 7;54(2):527-31. (PubMed)

Chourasia AH, Boland ML, Macleod KF. Mitophagy and cancer. Cancer Metab. 2015 Mar 26;3:4. (PubMed)

Chourasia AH, Tracy K, Frankenberger C, Boland ML, Sharifi MN, Drake LE, Sachleben JR, Asara JM, Locasale JW, Karczmar GS, Macleod KF. Mitophagy defects arising from BNip3 loss promote mammary tumor progression to metastasis. EMBO Rep. 2015 Sep;16(9):1145-63. (PubMed)

Chung EJ, Mlinar LB, Nord K, Sugimoto MJ, Wonder E, Alenghat FJ, Fang Y, Tirrell M. Monocyte-targeting supramolecular micellar assemblies: a molecular diagnostic tool for atherosclerosis. Adv Healthc Mater. 2015 Feb 18;4(3):367-76. (PubMed)

Chung EJ, Mlinar LB, Sugimoto MJ, Nord K, Roman BB, Tirrell M. In vivo biodistribution and clearance of peptide amphiphile micelles. Nanomedicine. 2015 Feb;11(2):479-87. (PubMed)

Chung EJ, Tirrell M. Recent Advances in Targeted, Self-Assembling Nanoparticles to Address Vascular Damage Due to Atherosclerosis. Adv Healthc Mater. 2015 Nov;4(16):2408-22. (PubMed)

Cinelli MA, Li H, Pensa AV, Kang S, Roman LJ, Martásek P, Poulos TL, Silverman RB. Phenyl Ether- and Aniline-Containing 2-Aminoquinolines as Potent and Selective Inhibitors of Neuronal Nitric Oxide Synthase. J Med Chem. 2015 Nov 12;58(21):8694-712. Erratum in: J Med Chem. 2016 Feb 11;59(3):1246. (PubMed)

Ciryam P, Kundra R, Morimoto RI, Dobson CM, Vendruscolo M. Supersaturation is a major driving force for protein aggregation in neurodegenerative diseases. Trends Pharmacol Sci. 2015 Feb;36(2):72-7. Review. (PubMed)

Cleland TP, Schroeter ER, Zamdborg L, Zheng W, Lee JE, Tran JC, Bern M, Duncan MB, Lebleu VS, Ahlf DR, Thomas PM, Kalluri R, Kelleher NL, Schweitzer MH. Mass Spectrometry and Antibody-Based Characterization of Blood Vessels from Brachylophosaurus canadensis. J Proteome Res. 2015 Dec 4;14(12):5252-62. (PubMed)

Cohen DT, Johnston RC, Rosson NT, Cheong PH, Scheidt KA. Functionalized cyclopentenes through a tandem NHC-catalyzed dynamic kinetic resolution and ambient temperature decarboxylation: mechanistic insight and synthetic application. Chem Commun (Camb). 2015 Feb 14;51(13):2690-3. (PubMed)

Compton PD, Fornelli L, Kelleher NL, Skinner OS. Probing Asymmetric Charge Partitioning of Protein Oligomers during Tandem Mass Spectrometry. Int. J. Mass Spectrom. 2015 Nov 15:132-136. (sciencedirect)

Cone JJ, Roitman JD, Roitman MF. Ghrelin regulates phasic dopamine and nucleus accumbens signaling evoked by food-predictive stimuli. J Neurochem. 2015 Jun;133(6):844-56. (PubMed)

Convissar SM, Bennett J, Baumgarten SC, Lydon JP, DeMayo FJ, Stocco C. GATA4 and GATA6 Knockdown During Luteinization Inhibits Progesterone Production and Gonadotropin Responsiveness in the Corpus Luteum of Female Mice. Biol Reprod. 2015 Dec;93(6):133. (PubMed)

Cybulski TR, Glaser JI, Marblestone AH, Zamft BM, Boyden ES, Church GM, Kording KP. Spatial Information in Large-Scale Neural Recordings. Front Comput Neurosci. 2015 Jan 21;8:172. (PubMed)

Dam DH, Lee H, Lee RC, Kim KH, Kelleher NL, Odom TW. Tunable Loading of Oligonucleotides with Secondary Structure on Gold Nanoparticles through a pH-driven Method. Bioconjug Chem. 2015 Feb 18;26(2):279-85. (PubMed)

Das A, Chen GF, Kim HW, Varadarajan S, Youn SW, Yang J, Finney L, Ushio-Fukai M, Fukai, T. Identification of Novel Copper-dependent Wound Repair Mechanism: Role of Copper Transport Protein Antioxidant 1. Circulation. 2015 132(Suppl 3), A13113-A13113. (circ.ahajournals.org)

DasGupta S, Shelke SA, Li NS, Piccirilli JA. Spinach RNA aptamer detects lead(ii) with high selectivity. Chem Commun (Camb). 2015 May 14;51(43):9034-7. (PubMed)

DeHart CJ, Perlman DH, Flint SJ. Impact of the adenoviral E4 Orf3 protein on the activity and post-translational modification of p53. J Virol. 2015 Mar 15;89(6):3209-20. (PubMed)

Deng J, Yang M, Chen Y, Chen X, Liu J, Sun S, Cheng H, Li Y, Bigio EH, Mesulam M, Xu Q, Du S, Fushimi K, Zhu L, Wu JY. FUS Interacts with HSP60 to Promote Mitochondrial Damage. PLoS Genet. 2015 Sep 3;11(9):e1005357. eCollection 2015 Sep. (PubMed)

Des Soye BJ, Patel JR, Isaacs FJ, Jewett MC. Repurposing the translation apparatus for synthetic biology. Review. Curr Opin Chem Biol. 2015 Jul 14;28:83-90. (PubMed)

Dominik PK, Kossiakoff AA. Phage display selections for affinity reagents to membrane proteins in nanodiscs. Methods Enzymol. 2015;557:219-45. (PubMed)

Dudley QM, Karim AS, Jewett MC. Cell-free metabolic engineering: Biomanufacturing beyond the cell. Biotechnol J. 2015 Jan;10(1):69-82. (PubMed)

Durbin KR, Skinner OS, Fellers RT, Kelleher NL. Analyzing Internal Fragmentation of Electrosprayed Ubiquitin Ions During Beam-Type Collisional Dissociation. J Am Soc Mass Spectrom. 2015 May;26(5):782-7. (PubMed)

Ebel ME, Awe O, Kaplan MH, Kansas GS. Diverse Inflammatory Cytokines Induce Selectin Ligand Expression on Murine CD4 T Cells via p38α MAPK. J Immunol. 2015 Jun 15;194(12):5781-8. (PubMed)

Fahrmann J, Grapov D, Yang J, Hammock B, Fiehn O, Bell GI, Hara M. Systemic alterations in the metabolome of diabetic NOD mice delineate increased oxidative stress accompanied by reduced inflammation and hypertriglyceremia. Am J Physiol Endocrinol Metab. 2015 Jun 1;308(11):E978-89. (PubMed)

Fellers RT, Greer JB, Early BP, Yu X, LeDuc RD, Kelleher NL, Thomas PM. ProSight Lite: Graphical software to analyze top-down mass spectrometry data. Proteomics. 2015 Apr;15(7):1235-8. (PubMed)

Ferrara AM, Pappa T, Fu J, Brown CD, Peterson A, Moeller LC, Wyne K, White KP, Pluzhnikov A, Trubetskoy V, Nobrega M, Weiss RE, Dumitrescu AM, Refetoff S. A novel mechanism of inherited TBG deficiency: mutation in a liver specific enhancer. J Clin Endocrinol Metab. 2015 Jan;100(1):E173-81. (PubMed)

Flourakis M, Kula-Eversole E, Hutchison AL, Han TH, Aranda K, Moose DL, White KP, Dinner AR, Lear BC, Ren D, Diekman CO, Raman IM, Allada R. A Conserved Bicycle Model for Circadian Clock Control of Membrane Excitability. Cell. 2015 Aug 13;162(4):836-48. (PubMed)

Foit L, Giles FJ, Gordon LI, Thaxton CS. Synthetic high-density lipoprotein-like nanoparticles for cancer therapy. Expert Rev Anticancer Ther. 2015 Jan;15(1):27-34. (PubMed)

Fortin SM, Cone JJ, Ng-Evans S, McCutcheon JE, Roitman MF. Sampling phasic dopamine signaling with fast-scan cyclic voltammetry in awake, behaving rats. Curr Protoc Neurosci. 2015 Jan 5;70:7.25.1-7.25.20. (PubMed)

Foster JG, Rzhetsky A, Evans JA. Tradition and Innovation in Scientists’ Research Strategies. American sociological review. 2015 80, 875-908. (sr.sagepub.com)

Francois-Vaughan H, Doud E, Thomas P, Kelleher N, Gruppuso P, Sanders J. Proteomic Profiling of Histone Posttranslational Modifications in Late Gestation Fetal Hepatocytes Capable of Liver Repopulation. The FASEB Journal. 2015 Apr. Vol. 29 no. 1 Supplement 416.2. (fasebj.org)

Fritz BR, Jamil OK, Jewett MC. Implications of macromolecular crowding and reducing conditions for in vitro ribosome construction. Nucleic Acids Res. 2015 May 19;43(9):4774-84. (PubMed)

Fu Y, Luo GZ, Chen K, Deng X, Yu M, Han D, Hao Z, Liu J, Lu X, Doré LC, Weng X, Ji Q, Mets L, He C. N6-methyldeoxyadenosine marks active transcription start sites in Chlamydomonas. Cell. 2015 May 7;161(4):879-92. (PubMed)

Fuchsova B, Serebryannyy LA, de Lanerolle P. Nuclear actin and Myosins in adenovirus infection. Exp Cell Res. 2015 Nov 1;338(2):170-182. (PubMed)

Gamazon ER, Wheeler HE, Shah KP, Mozaffari SV, Aquino-Michaels K, Carroll RJ, Eyler AE, Denny JC; GTEx Consortium, Nicolae DL, Cox NJ, Im HK. A gene-based association method for mapping traits using reference transcriptome data. Nat Genet. 2015 Sep;47(9):1091-8. (PubMed)

Gebhardt MJ, Gallagher LA, Jacobson RK, Usacheva EA, Peterson LR, Zurawski DV, Shuman HA. Joint Transcriptional Control of Virulence and Resistance to Antibiotic and Environmental Stress in Acinetobacter baumannii. MBio. 2015 Nov 10;6(6). (PubMed)

Geeleher P, Loboda A, Lenkala D, Wang F, LaCroix B, Karovic S, Wang J, Nebozhyn M, Chisamore M, Hardwick J, Maitland ML, Huang RS. Predicting Response to Histone Deacetylase Inhibitors Using High-Throughput Genomics. J Natl Cancer Inst. 2015 Aug 21;107(11). (PubMed)

Gillam MP, Nimbalkar D, Sun L, Christov K, Ray D, Kaldis P, Liu X, Kiyokawa H. MEN1 tumorigenesis in the pituitary and pancreatic islet requires Cdk4 but not Cdk2. Oncogene. 2015 Feb 12;34(7):932-8. (PubMed)

Giuntoli RD, Linzer NB, Banigan EJ, Sing CE, de la Cruz MO, Graham JS, Johnson RC, Marko JF. DNA-Segment-Facilitated Dissociation of Fis and NHP6A from DNA Detected via Single-Molecule Mechanical Response. J Mol Biol. 2015 Sep 25;427(19):3123-36. (PubMed)

Glaser JI, Zamft BM, Church GM, Kording KP. Puzzle Imaging: Using Large-Scale Dimensionality Reduction Algorithms for Localization. PLoS One. 2015 Jul 20;10(7):e0131593. eCollection 2015. (PubMed)

Gouvêa DY, Aprison EZ, Ruvinsky I. Experience Modulates the Reproductive Response to Heat Stress in C. elegans via Multiple Physiological Processes. PLoS One. 2015 Dec 29;10(12):e0145925. eCollection 2015. (PubMed)

Grzybowski AT, Chen Z, Ruthenburg AJ. Calibrating ChIP-Seq with Nucleosomal Internal Standards to Measure Histone Modification Density Genome Wide. Mol Cell. 2015 Jun 4;58(5):886-99. (PubMed)

Gutka HJ, Wang Y, Franzblau SG, Movahedzadeh F. glpx Gene in Mycobacterium tuberculosis Is Required for In Vitro Gluconeogenic Growth and In Vivo Survival. PLoS One. 2015 Sep 23;10(9):e0138436. eCollection 2015. (PubMed)

Han Y, Lyman K, Clutter M, Schiltz GE, Ismail QA, Prados DB, Luan CH, Chetkovich DM. Identification of Small-Molecule Inhibitors of Hyperpolarization-Activated Cyclic Nucleotide-Gated Channels. J Biomol Screen. 2015 Oct;20(9):1124-31. (PubMed)

Hlavaty KA, Luo X, Shea LD, Miller SD. Cellular and molecular targeting for nanotherapeutics in transplantation tolerance. Review. Clin Immunol. 2015 Sep;160(1):14-23. (PubMed)

Ho D. Nanodiamond-based chemotherapy and imaging. Cancer Treat Res. 2015;166:85-102. Review. (PubMed)

Ho D, Wang CH, Chow EK. Nanodiamonds: The intersection of nanotechnology, drug development, and personalized medicine. Sci Adv. 2015 Aug 21;1(7):e1500439. eCollection 2015 Aug. Review. (PubMed)

Holbrook RJ, Weinberg DJ, Peterson MD, Weiss EA, Meade TJ. Light-activated protein inhibition through photoinduced electron transfer of a ruthenium(II)-cobalt(III) bimetallic complex. J Am Chem Soc. 2015 Mar 11;137(9):3379-85. (PubMed)

Holleran CL, Rodriguez KS, Echauz A, Leech KA, Hornby TG. Potential contributions of training intensity on locomotor performance in individuals with chronic stroke. J Neurol Phys Ther. 2015 Apr;39(2):95-102. (PubMed)

Hong BJ, Cho VY, Bleher R, Schatz GC, Nguyen ST. Enhancing DNA-Mediated Assemblies of Supramolecular Cage Dimers through Tuning Core Flexibility and DNA Length–A Combined Experimental-Modeling Study. J Am Chem Soc. 2015 Oct 21;137(41):13381-8. (PubMed)

Hong BJ, Eryazici I, Bleher R, Thaner RV, Mirkin CA, Nguyen ST. Directed Assembly of Nucleic Acid-Based Polymeric Nanoparticles from Molecular Tetravalent Cores. J Am Chem Soc. 2015 Jul 1;137(25):8184-91. (PubMed)

Hong SH, Kwon YC, Martin RW, Soye BJ, de Paz AM, Swonger KN, Ntai I, Kelleher NL, Jewett MC. Improving Cell-Free Protein Synthesis through Genome Engineering of Escherichia coli Lacking Release Factor 1. Chembiochem. 2015 Mar 23;16(5):844-53. (PubMed)

Hornby TG, Holleran CL, Leddy AL, Hennessy P, Leech KA, Connolly M, Moore JL, Straube D, Lovell L, Roth E. Feasibility of Focused Stepping Practice During Inpatient Rehabilitation Poststroke and Potential Contributions to Mobility Outcomes. Neurorehabil Neural Repair. 2015 Nov;29(10):923-32. (PubMed)

Hornsby M, Paduch M, Miersch S, Sääf A, Matsuguchi T, Lee B, Wypisniak K, Doak A, King D, Usatyuk S, Perry K, Lu V, Thomas W, Luke J, Goodman J, Hoey RJ, Lai D, Griffin C, Li Z, Vizeacoumar FJ, Dong D, Campbell E, Anderson S, Zhong N, Gräslund S, Koide S, Moffat J, Sidhu S, Kossiakoff A, Wells J. A High Through-put Platform for Recombinant Antibodies to Folded Proteins. Mol Cell Proteomics. 2015 Oct;14(10):2833-47. (PubMed)

Hu H, Xu J, Dai Y. Regulatory Elements in Low-Methylated Regions Predict Directional Change of Gene Expression. IEEE J Biomed Health Inform. 2015 Jul;19(4):1293-300. (PubMed)

Hu L, Wang C, Kennedy RM, Marks LD, Poeppelmeier KR. The role of oleic acid: from synthesis to assembly of perovskite nanocuboid two-dimensional arrays. Inorg Chem. 2015 Feb 2;54(3):740-5. (PubMed)

Huang R, Gorman KT, Vinci CR, Dobrovetsky E, Gräslund S, Kay BK. Streamlining the Pipeline for Generation of Recombinant Affinity Reagents by Integrating the Affinity Maturation Step. Int J Mol Sci. 2015 Sep 30;16(10):23587-603. (PubMed)

Huang X, Zhou J, Zhou A, Olson ST. Thermodynamic and kinetic characterization of the protein Z-dependent protease inhibitor (ZPI)-protein Z interaction reveals an unexpected role for ZPI Lys-239. J Biol Chem. 2015 Apr 10;290(15):9906-18. (PubMed)

Hung ME, Leonard JN. Stabilization of Exosome Targeting Peptides via Engineered Glycosylation. J Biol Chem. 2015 Mar 27;290(13):8166-72. (PubMed)

Jha AR, Miles CM, Lippert NR, Brown CD, White KP, Kreitman M. Whole genome resequencing of experimental populations reveals polygenic basis of egg size variation in Drosophila melanogaster. Mol Biol Evol. 2015 Oct;32(10):2616-32. (PubMed)

Jiang B, Jen M, Perrin L, Wertheim JA, Ameer GA. SIRT1 Overexpression Maintains Cell Phenotype and Function of Endothelial Cells Derived from Induced Pluripotent Stem Cells. Stem Cells Dev. 2015 Dec 1;24(23):2740-5. (PubMed)

Jiang B, Perrin L, Kats D, Meade T, Ameer G. Enabling non-invasive assessment of an engineered endothelium on ePTFE vascular grafts without increasing oxidative stress. Biomaterials. 2015 Nov;69:110-20. (PubMed)

Kachalo S, Naveed H, Cao Y, Zhao J, Liang J. Mechanical model of geometric cell and topological algorithm for cell dynamics from single-cell to formation of monolayered tissues with pattern. PLoS One. 2015 May 14;10(5):e0126484. eCollection 2015. (PubMed)

Kathman SG, Span I, Smith AT, Xu Z, Zhan J, Rosenzweig AC, Statsyuk AV. A Small Molecule That Switches a Ubiquitin Ligase From a Processive to a Distributive Enzymatic Mechanism. J Am Chem Soc. 2015 Oct 7;137(39):12442-5. (PubMed)

Keck MK, Zuo Z, Khattri A, Stricker TP, Brown C, Imanguli M, Rieke D, Endhardt K, Fang P, Bragelmann J, DeBoer R, El Dinali M, Aktolga S, Lei Z, Tan P, Rozen SG, Salgia R, Weichselbaum RR, Lingen MW, Story MD, Ang KK, Cohen EE, White KP, Vokes EE, Seiwert TY. Integrative analysis of Head and Neck Cancer identifies two biologically distinct HPV and three non-HPV subtypes. Clin Cancer Res. 2015 Feb 15;21(4):870-81. (PubMed)

Kenny HA, Lal-Nag M, White EA, Shen M, Chiang CY, Mitra AK, Zhang Y, Curtis M, Schryver EM, Bettis S, Jadhav A, Boxer MB, Li Z, Ferrer M, Lengyel E. Quantitative high throughput screening using a primary human three-dimensional organotypic culture predicts in vivo efficacy. Nat Commun. 2015 Feb 5;6:6220. (PubMed)

Khattri A, Zuo Z, Brägelmann J, Keck MK, El Dinali M, Brown CD, Stricker T, Munagala A, Cohen EE, Lingen MW, White KP, Vokes EE, Seiwert TY. Rare occurrence of EGFRvIII deletion in head and neck squamous cell carcinoma. Oral Oncol. 2015 Jan;51(1):53-58. (PubMed)

Kho AN, Cashy JP, Jackson KL, Pah AR, Goel S, Boehnke J, Humphries JE, Kominers SD, Hota BN, Sims SA, Malin BA, French DD, Walunas TL, Meltzer DO, Kaleba EO, Jones RC, Galanter WL. Design and implementation of a privacy preserving electronic health record linkage tool in Chicago. J Am Med Inform Assoc. 2015 Sep;22(5):1072-80. (PubMed)

Kim A, Wolf NM, Zhub T, Johnson ME, Deng J, Cook JL, Fung LMW. Identification of Bacillus anthracis PurE inhibitors with antimicrobial activity. Bioorg Med Chem. 2015 Apr 1;23(7):1492-9. (PubMed)

Kim DH, Larson AC. Deoxycholate bile acid directed synthesis of branched Au nanostructures for near infrared photothermal ablation. Biomaterials. 2015 Jul;56:154-64. (PubMed)

Kim K, Compton PD, Toby TK, Thomas PM, John T. Wilkins JT, Mutharasan RK, Kelleher NL. Reducing Protein Oxidation in Low-Flow Electrospray Enables Deeper Investigation of Proteoforms by Top Down Proteomics. EuPA Open Proteomics. 2015 Sep;8:40–47. (sciencedirect)

Kim KH, Compton PD, Tran JC, Kelleher NL. An On-line Matrix Removal Platform for Coupling Gel-Based Separations to Whole Protein Electrospray Ionization Mass Spectrometry. J Proteome Res. 2015 May 1;14(5):2199-206. (PubMed)

Kim YJ, Lee J, Kim BJ; T2D-Genes Consortium, Park T. A new strategy for enhancing imputation quality of rare variants from next-generation sequencing data via combining SNP and exome chip data. BMC Genomics. 2015 Dec 29;16:1109. (PubMed)

Kirstein J, Morito D, Kakihana T, Sugihara M, Minnen A, Hipp MS, Nussbaum-Krammer C, Hartl FU, Nagata K, Morimoto RI. Proteotoxic stress and ageing triggers the loss of redox homeostasis across cellular compartments. EMBO J. 2015 Sep 14;34(18):2334-49. (PubMed)

Koerber JT, Hornsby MJ, Wells JA. An improved single-chain Fab platform for efficient display and recombinant expression. J Mol Biol. 2015 Jan 30;427(2):576-86. (PubMed)

Kohane IS. An autism case history to review the systematic analysis of large-scale data to refine the diagnosis and treatment of neuropsychiatric disorders. Biol Psychiatry. 2015 Jan 1;77(1):59-65. Review. (PubMed)

Kokoszka ME, Kay BK. Mapping protein-protein interactions with phage-displayed combinatorial Peptide libraries and alanine scanning. Methods Mol Biol. 2015;1248:173-88. (PubMed)

Kouri FM, Hurley LA, Daniel WL, Day ES, Hua Y, Hao L, Peng CY, Merkel TJ, Queisser MA, Ritner C, Zhang H, James CD, Sznajder JI, Chin L, Giljohann DA, Kessler JA, Peter ME, Mirkin CA, Stegh AH. miR-182 integrates apoptosis, growth, and differentiation programs in glioblastoma. Genes Dev. 2015 Apr 1;29(7):732-45. (PubMed)

Kumar S, Briguglio JS, Turkewitz AP. Secretion of polypeptide crystals from Tetrahymena thermophila secretory organelles (mucocysts) depends on processing by a cysteine cathepsin, CTH4. Eukaryot Cell. 2015 Aug;14(8):817-33. (PubMed)

Labbadia J, Morimoto RI. Repression of the Heat Shock Response Is a Programmed Event at the Onset of Reproduction. Mol Cell. 2015 Aug 20;59(4):639-50. (PubMed)

Labbadia J, Morimoto RI. The biology of proteostasis in aging and disease. Annu Rev Biochem. 2015;84:435-64. Review. (PubMed)

LaFave LM, Béguelin W, Koche R, Teater M, Spitzer B, Chramiec A, Papalexi E, Keller MD, Hricik T, Konstantinoff K, Micol JB, Durham B, Knutson SK, Campbell JE, Blum G, Shi X, Doud EH, Krivtsov AV, Chung YR, Khodos I, de Stanchina E, Ouerfelli O, Adusumilli PS, Thomas PM, Kelleher NL, Luo M, Keilhack H, Abdel-Wahab O, Melnick A, Armstrong SA, Levine RL. Loss of BAP1 function leads to EZH2-dependent transformation. Nat Med. 2015 Nov;21(11):1344-9. (PubMed)

Lahey BB, Rathouz PJ, Keenan K, Stepp SD, Loeber R, Hipwell AE. Criterion validity of the general factor of psychopathology in a prospective study of girls. J Child Psychol Psychiatry. 2015 Apr;56(4):415-22. (PubMed)

Lau KH, Sileika TS, Park SH, Sousa AM, Burch P, Szleifer I, Messersmith PB. Molecular Design of Antifouling Polymer Brushes Using Sequence-Specific Peptoids. Adv Mater Interfaces. 2015 Jan 7;2(1). (PubMed)

Le HV, Hawker DD, Wu R, Doud E, Widom J, Sanishvili R, Liu D, Kelleher NL, Silverman RB. Design and Mechanism of Tetrahydrothiophene-Based γ-Aminobutyric Acid Aminotransferase Inactivators. J Am Chem Soc. 2015 Apr 8;137(13):4525-33. (PubMed)

Lee A, Scheidt KA. N-Heterocyclic carbene-catalyzed enantioselective annulations: a dual activation strategy for a formal [4+2] addition for dihydrocoumarins. Chem Commun (Camb). 2015 Feb 25;51(16):3407-10. (PubMed)

Lee DK, Kim SV, Limansubroto AN, Yen A, Soundia A, Wang CY, Shi W, Hong C, Tetradis S, Kim Y, Park NH, Kang MK, Ho D. Nanodiamond-Gutta Percha Composite Biomaterials for Root Canal Therapy. ACS Nano. 2015 Nov 24;9(11):11490-501. (PubMed)

Lee H, Dam DH, Ha JW, Yue J, Odom TW. Enhanced Human Epidermal Growth Factor Receptor 2 Degradation in Breast Cancer Cells by Lysosome-Targeting Gold Nanoconstructs. ACS Nano. 2015 Oct 27;9(10):9859-67. (PubMed)

Lee H, Doud EH, Wu R, Sanishvili R, Juncosa JI, Liu D, Kelleher NL, Silverman RB. Mechanism of inactivation of γ-aminobutyric acid aminotransferase by (1S,3S)-3-amino-4-difluoromethylenyl-1-cyclopentanoic acid (CPP-115). J Am Chem Soc. 2015 Feb 25;137(7):2628-40. (PubMed)

Lee H, Le HV, Wu R, Doud E, Sanishvili R, Kellie JF, Compton PD, Pachaiyappan B, Liu D, Kelleher NL, Silverman RB. Mechanism of Inactivation of GABA Aminotransferase by (E)- and (Z)-(1S,3S)-3-Amino-4-fluoromethylenyl-1-cyclopentanoic Acid. ACS Chem Biol. 2015 Sep 18;10(9):2087-98. (PubMed)

Lee H, Lei H, Santarsiero BD, Gatuz JL, Cao S, Rice AJ, Patel K, Szypulinski MZ, Ojeda I, Ghosh AK, Johnson ME. Inhibitor recognition specificity of MERS-CoV papain-like protease may differ from that of SARS-CoV. ACS Chem Biol. 2015 Jun 19;10(6):1456-65. (PubMed)

Lee H, Odom TW. Controlling ligand density on nanoparticles as a means to enhance biological activity. Nanomedicine (Lond). 2015 Jan;10(2):177-80. (PubMed)

Lee U, Skinner JJ, Reinitz J, Rosner MR, Kim EJ. Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations. PLoS One. 2015 Jul 23;10(7):e0132397. eCollection 2015. (PubMed)

Lewis JC. Metallopeptide catalysts and artificial metalloenzymes containing unnatural amino acids. Curr Opin Chem Biol. 2015 Apr;25:27-35. Review. (PubMed)

Li J, Wang H, Zhong Q, Zhu X, Chen SJ, Qian Y, Costakis J, Bunney G, Beiser DG, Leff AR, Lewandowski ED, O’Donnell JM, Vanden Hoek TL. A Novel Pharmacological Strategy by PTEN Inhibition for Improving Metabolic Resuscitation and Survival after Mouse Cardiac Arrest. Am J Physiol Heart Circ Physiol. 2015 Jun 1;308(11):H1414-22. (PubMed)

Liang J, Cao Y, Gursoy G, Naveed H, Terebus A, Zhao J. Multiscale modeling of cellular epigenetic states: stochasticity in molecular networks, chromatin folding in cell nuclei, and tissue pattern formation of cells. Critical Reviews in Biomedical Engineering. 2015. 43(4):323-346. (gila.bioe.uic.edu)

Licht JD. DNA Methylation Inhibitors in Cancer Therapy: The Immunity Dimension. Cell. 2015 Aug 27;162(5):938-9. (PubMed)

Liu C, Chung M. Genetics and epigenetics of circadian rhythms and their potential roles in neuropsychiatric disorders. Neurosci Bull. 2015 Feb;31(1):141-59. (PubMed)

Lorenzatto RK, Kim K, Ntai I, Prado Paludo G, Camargo de Lima J, Thomas PM, Kelleher NL, Ferreira HB. Top down proteomics reveals mature proteoforms expressed in subcellular fractions of the Echinococcus granulosus pre-adult stage. J Proteome Res. 2015 Nov 6;14(11):4805-14. (PubMed)

Lu X, Han D, Zhao BS, Song CX, Zhang LS, Doré LC, He C. Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics. Cell Res. 2015 Mar;25(3):386-9. (PubMed)

Lu X, Zhao BS, He C. TET family proteins: oxidation activity, interacting molecules, and functions in diseases. Chem Rev. 2015 Mar 25;115(6):2225-39. (PubMed)

Luo GZ, Blanco MA, Greer EL, He C, Shi Y. DNA N(6)-methyladenine: a new epigenetic mark in eukaryotes? Nat Rev Mol Cell Biol. 2015 Dec;16(12):705-10. Review. (PubMed)

Luo Z, Jiang Y, Myers BD, Isheim D, Wu J, Zimmerman JF, Wang Z, Li Q, Wang Y, Chen X, Dravid VP, Seidman DN, Tian B. 3D LITHOGRAPHY. Atomic gold-enabled three-dimensional lithography for silicon mesostructures. Science. 2015 Jun 26;348(6242):1451-5. (PubMed)

Luthi AJ, Lyssenko NN, Quach D, McMahon KM, Millar JS, Vickers KC, Rader DJ, Phillips MC, Mirkin CA, Thaxton CS. Robust passive and active efflux of cellular cholesterol to a designer functional mimic of high density lipoprotein. J Lipid Res. 2015 May;56(5):972-85. (PubMed)

Mahajan A, Sim X, Ng HJ, (…), Bell GI, (…), T2D-GENES consortium and GoT2D consortium. Identification and functional characterization of G6PC2 coding variants influencing glycemic traits define an effector transcript at the G6PC2-ABCB11 locus. PLoS Genet. 2015 Jan 27;11(1):e1004876. eCollection 2015 Jan. (PubMed)

Mao Q, Stinnett HK, Ho RK. Asymmetric cell convergence-driven fin bud initiation and pre-pattern requires Tbx5a control of a mesenchymal Fgf signal. Development. 2015 Dec 15;142(24):4329-39. (PubMed)

Marcon E, Jain H, Bhattacharya A, (…) Kossiakoff AA, (…) Edwards AM. Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation. Nat Methods. 2015 Aug;12(8):725-31. (PubMed)

Massucci FA, Guimerà R, Amaral LA, Sales-Pardo M. Scaling and optimal synergy: Two principles determining microbial growth in complex media. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jun;91(6):062703. (PubMed)

Mateja A, Paduch M, Chang HY, Szydlowska A, Kossiakoff AA, Hegde RS, Keenan RJ. Protein targeting. Structure of the Get3 targeting factor in complex with its membrane protein cargo. Science. 2015 Mar 6;347(6226):1152-5. (PubMed)

Mayo LM, de Wit H. Acquisition of Responses to a Methamphetamine-Associated Cue in Healthy Humans: Self-Report, Behavioral, and Psychophysiological Measures. Neuropsychopharmacology. 2015 Jun;40(7):1734-41. (PubMed)

McDonald BR, Nibbs AE, Scheidt KA. A biomimetic strategy to access the silybins: total synthesis of (-)-isosilybin A. Org Lett. 2015 Jan 2;17(1):98-101. (PubMed)

McShan D, Kathman S, Lowe B, Xu Z, Zhan J, Statsyuk A, Ogungbe IV. Identification of non-peptidic cysteine reactive fragments as inhibitors of cysteine protease rhodesain. Bioorg Med Chem Lett. 2015 Oct 15;25(20):4509-12. (PubMed)

Melamed RD, Emmett KJ, Madubata C, Rzhetsky A, Rabadan R. Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes. Nat Commun. 2015 Apr 30;6:7033. (PubMed)

Melamed RD, Wang J, Iavarone A, Rabadan R. An information theoretic method to identify combinations of genomic alterations that promote glioblastoma. J Mol Cell Biol. 2015 Jun;7(3):203-13. (PubMed)

Miersch S, Li Z, Hanna R, McLaughlin ME, Hornsby M, Matsuguchi T, Paduch M, Sääf A, Wells J, Koide S, Kossiakoff A, Sidhu SS. Scalable high throughput selection from phage-displayed synthetic antibody libraries. J Vis Exp. 2015 Jan 17;(95):51492. (PubMed)

Mietlicki-Baase EG, Reiner DJ, Cone JJ, Olivos DR, McGrath LE, Zimmer DJ, Roitman MF, Hayes MR. Amylin Modulates the Mesolimbic Dopamine System to Control Energy Balance. Neuropsychopharmacology. 2015 Jan;40(2):372-385. (PubMed)

Mishra RK, Singh J. A Structure Guided QSAR: A Rapid and Accurate technique to predict IC50: A Case Study. Curr Comput Aided Drug Des. 2015;11(2):152-63. (PubMed)

Mishra RK, Wei C, Hresko RC, Bajpai R, Heitmeier M, Matulis SM, Nooka AK, Rosen ST, Hruz PW, Schiltz GE, Shanmugam M. In Silico Modeling-based Identification of GLUT4 Selective Inhibitors for Cancer Therapy. J Biol Chem. 2015 Jun 5;290(23):14441-53. (PubMed)

Mohd Abdul Rashid MB, Toh TB, Silva A, Nurrul Abdullah L, Ho CM, Ho D, Chow EK. Identification and Optimization of Combinatorial Glucose Metabolism Inhibitors in Hepatocellular Carcinomas. J Lab Autom. 2015 Aug;20(4):423-37. (PubMed)

Moreira JA, Zeng XH, Amaral LA. The Distribution of the Asymptotic Number of Citations to Sets of Publications by a Researcher or from an Academic Department Are Consistent with a Discrete Lognormal Model. PLoS One. 2015 Nov 16;10(11):e0143108. eCollection 2015. (PubMed)

Mugzach O, Peleg M, Bagley SC, Guter SJ, Cook EH, Altman RB. An ontology for Autism Spectrum Disorder (ASD) to infer ASD phenotypes from Autism Diagnostic Interview-Revised data. J Biomed Inform. 2015 Aug;56:333-47. (PubMed)

Mukherjee S, Ura M, Hoey RJ, Kossiakoff AA. A new versatile immobilization tag based on the ultra high affinity and reversibility of the calmodulin- calmodulin binding peptide interaction. J Mol Biol. 2015 Aug 14;427(16):2707-25. (PubMed)

Muscat CC, Torre-Santiago KM, Tran MV, Powers JA, Wignall SM. Kinetochore-independent chromosome segregation driven by lateral microtubule bundles. Elife. 2015 May 30;4. (PubMed)

Nalle SC, Turner JR. Intestinal barrier loss as a critical pathogenic link between inflammatory bowel disease and graft-versus-host disease. Review. Mucosal Immunol. 2015 Jul;8(4):720-30. (PubMed)

Nandwana V, De M, Chu S, Jaiswal M, Rotz M, Meade TJ, Dravid VP. Theranostic Magnetic Nanostructures (MNS) for Cancer. Cancer Treat Res. 2015;166:51-83. Review. (PubMed)

Narayan SP, Choi CH, Hao L, Calabrese CM, Auyeung E, Zhang C, Goor OJ, Mirkin CA. The Sequence-Specific Cellular Uptake of Spherical Nucleic Acid Nanoparticle Conjugates. Small. 2015 Sep;11(33):4173-82. (PubMed)

Nillegoda NB, Kirstein J, Szlachcic A, Berynskyy M, Stank A, Stengel F, Arnsburg K, Gao X, Scior A, Aebersold R, Guilbride DL, Wade RC, Morimoto RI, Mayer MP, Bukau B. Crucial HSP70 co-chaperone complex unlocks metazoan protein disaggregation. Nature. 2015 Aug 13;524(7564):247-51. (PubMed)

Nocula-Lugowska M, Lugowski M, Salgia R, Kossiakoff AA. Engineering synthetic antibody inhibitors specific for LD2 or LD4 motifs of paxillin. J Mol Biol. 2015 Jul 31;427(15):2532-47. (PubMed)

Nomme J, Antanasijevic A, Caffrey M, Van Itallie CM, Anderson JM, Fanning AS, Lavie A. Structural basis of a key factor regulating the affinity between the zonula occludens first PDZ domain and claudins. J Biol Chem. 2015 Jul 3;290(27):16595-606. (PubMed)

O’Brien MN, Jones MR, Lee B, Mirkin CA. Anisotropic nanoparticle complementarity in DNA-mediated co-crystallization. Nat Mater. 2015 Aug;14(8):833-9. (PubMed)

Orelle C, Carlson ED, Szal T, Florin T, Jewett MC, Mankin AS. Protein synthesis by ribosomes with tethered subunits. Nature. 2015 Aug 6;524(7563):119-24. (PubMed)

Padovano JD, Ravindran S, Snee PT, Ramachandran A, Bedran-Russo AK, George A. DMP1-derived Peptides Promote Remineralization of Human Dentin. J Dent Res. 2015 Apr;94(4):608-14. (PubMed)

Parashar V, Aggarwal C, Federle MJ, Neiditch MB. Rgg protein structure-function and inhibition by cyclic peptide compounds. Proc Natl Acad Sci U S A. 2015 Apr 21;112(16):5177-82. (PubMed)

Pattanayak GK, Lambert G, Bernat K, Rust MJ. Controlling the Cyanobacterial Clock by Synthetically Rewiring Metabolism. Cell Rep. 2015 Dec 22;13(11):2362-7. (PubMed)

Payne JT, Poor CB, Lewis JC. Directed Evolution of RebH for Site-Selective Halogenation of Large Biologically Active Molecules. Angew Chem Int Ed Engl. 2015 Mar 27;54(14):4226-30. (PubMed)

Pederson T, King MC, Marko JF. Forces, fluctuations, and self-organization in the nucleus. Mol Biol Cell. 2015 Nov 5;26(22):3915-9. (PubMed)

Peek CB, Ramsey KM, Levine DC, Marcheva B, Perelis M, Bass J. Circadian regulation of cellular physiology. Methods Enzymol. 2015;552:165-84. (PubMed)

Peláez N, Gavalda-Miralles A, Wang B, Navarro HT, Gudjonson H, Rebay I, Dinner AR, Katsaggelos AK, Amaral LA, Carthew RW. Dynamics and heterogeneity of a fate determinant during transition towards cell differentiation. Elife. 2015 Nov 19;4. (PubMed)

Percha B, Altman RB. Learning the Structure of Biomedical Relationships from Unstructured Text. PLoS Comput Biol. 2015 Jul 28;11(7):e1004216. eCollection 2015 Jul. (PubMed)

Perelis M, Marcheva B, Ramsey KM, Schipma MJ, Hutchison AL, Taguchi A, Peek CB, Hong H, Huang W, Omura C, Allred AL, Bradfield CA, Dinner AR, Barish GD, Bass J. Pancreatic β cell enhancers regulate rhythmic transcription of genes controlling insulin secretion. Science. 2015 Nov 6;350(6261):aac4250. (PubMed)

Perelis M, Ramsey KM, Bass J. The molecular clock as a metabolic rheostat. Diabetes Obes Metab. 2015 Sep;17 Suppl 1:99-105. (PubMed)

Peters PN, Schryver EM, Lengyel E, Kenny H. Modeling the Early Steps of Ovarian Cancer Dissemination in an Organotypic Culture of the Human Peritoneal Cavity. J Vis Exp. 2015 Dec 31;(106). (PubMed)

Philips SJ, Canalizo-Hernandez M, Yildirim I, Schatz GC, Mondragón A, O’Halloran TV. TRANSCRIPTION. Allosteric transcriptional regulation via changes in the overall topology of the core promoter. Science. 2015 Aug 21;349(6250):877-81. (PubMed)

Piraino MS, Kelliher MT, Aburas J, Southern CA. Single molecule Förster resonance energy transfer studies of the effect of EndoS deglycosylation on the structure of IgG. Immunol Lett. 2015 Jun 22;167(1):29-33(PubMed)

Pitner RA, Scarpelli AH, Leonard JN. Regulation of bacterial gene expression by protease-alleviated spatial sequestration (PASS). ACS Synth Biol. 2015 Sep 18;4(9):966-74. (PubMed)

Plebanek MP, Mutharasan RK, Volpert O, Matov A, Gatlin JC, Thaxton CS. Nanoparticle Targeting and Cholesterol Flux Through Scavenger Receptor Type B-1 Inhibits Cellular Exosome Uptake. Sci Rep. 2015 Oct 29;5:15724. (PubMed)

Poncela-Casasnovas J, Spring B, McClary D, Moller AC, Mukogo R, Pellegrini CA, Coons MJ, Davidson M, Mukherjee S, Nunes Amaral LA. Social embeddedness in an online weight management programme is linked to greater weight loss. J R Soc Interface. 2015 Mar 6;12(104):20140686. (PubMed)

Prilutsky D, Kho AT, Palmer NP, Bhakar AL, Smedemark-Margulies N, Kong SW, Margulies DM, Bear MF, Kohane IS. Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures. Mol Autism. 2015 Dec 21;6:66. eCollection 2015. (PubMed)

Que EL, Bleher R, Duncan FE, Kong BY, Gleber SC, Vogt S, Chen S, Garwin SA, Bayer AR, Dravid VP, Woodruff TK, O’Halloran TV. Quantitative mapping of zinc fluxes in the mammalian egg reveals the origin of fertilization-induced zinc sparks.Nat Chem. 2015 Feb;7(2):130-9. (PubMed)

Radovic-Moreno AF, Chernyak N, Mader CC, Nallagatla S, Kang RS, Hao L, Walker DA, Halo TL, Merkel TJ, Rische CH, Anantatmula S, Burkhart M, Mirkin CA, Gryaznov SM. Immunomodulatory spherical nucleic acids. Proc Natl Acad Sci U S A. 2015 Mar 31;112(13):3892-7. (PubMed)

Randeria PS, Jones MR, Kohlstedt KL, Banga RJ, Olvera de la Cruz M, Schatz GC, Mirkin CA. What controls the hybridization thermodynamics of spherical nucleic acids? J Am Chem Soc. 2015 Mar 18;137(10):3486-9. (PubMed)

Randeria PS, Seeger MA, Wang XQ, Wilson H, Shipp D, Mirkin CA, Paller AS. siRNA-based spherical nucleic acids reverse impaired wound healing in diabetic mice by ganglioside GM3 synthase knockdown. Proc Natl Acad Sci U S A. 2015 May 5;112(18):5573-8. (PubMed)

Rayahin JE, Buhrman JS, Zhang Y, Koh TJ, Gemeinhart RA. High and low molecular weight hyaluronic acid differentially influence macrophage activation. ACS Biomater Sci Eng. 2015 Jul 13;1(7):481-493. (PubMed)

Regnier SM, Kirkley AG, Ye H, El-Hashani E, Zhang X, Neel BA, Kamau W, Thomas CC, Williams AK, Hayes ET, Massad NL, Johnson DN, Huang L, Zhang C, Sargis RM. Dietary exposure to the endocrine disruptor tolylfluanid promotes global metabolic dysfunction in male mice. Endocrinology. 2015 Mar;156(3):896-910. (PubMed)

Restuccia A, Tian YF, Collier JH, Hudalla GA. Self-Assembled Glycopeptide Nanofibers as Modulators of Galectin-1 Bioactivity. Cellular and Molecular Bioengineering. 2015. Cell Mol Bioeng. 2015 Sep 1;8(3):471-487. (springer.com)

Rhee SH, Lahey BB, Waldman ID. Comorbidity Among Dimensions of Childhood Psychopathology: Converging Evidence from Behavior Genetics. Child Dev Perspect. 2015 Mar 1;9(1):26-31. (PubMed)

Rizk SS, Kouadio JL, Szymborska A, Duguid EM, Mukherjee S, Zheng J, Clevenger CV, Kossiakoff AA. Engineering synthetic antibody binders for allosteric inhibition of prolactin receptor signaling. Cell Commun Signal. 2015 Jan 15;13(1):1. (PubMed)

Rodríguez-Limas WA, Tannenbaum V, Tyo KE. Blocking endocytotic mechanisms to improve heterologous protein titers in Saccharomyces cerevisiae. Biotechnol Bioeng. 2015 Feb;112(2):376-385. (PubMed)

Rothbart SB, Dickson BM, Raab JR, Grzybowski AT, Krajewski K, Guo AH, Shanle EK, Josefowicz SZ, Fuchs SM, Allis CD, Magnuson TR, Ruthenburg AJ, Strahl BD. An Interactive Database for the Assessment of Histone Antibody Specificity. Mol Cell. 2015 Aug 6;59(3):502-11. (PubMed)

Rotz MW, Culver KS, Parigi G, MacRenaris KW, Luchinat C, Odom TW, Meade TJ. High relaxivity Gd(III)-DNA gold nanostars: investigation of shape effects on proton relaxation. ACS Nano. 2015 Mar 24;9(3):3385-96. (PubMed)

Roy A, Jana M, Kundu M, Corbett GT, Rangaswamy SB, Mishra RK, Luan CH, Gonzalez FJ, Pahan K. HMG-CoA Reductase Inhibitors Bind to PPARα to Upregulate Neurotrophin Expression in the Brain and Improve Memory in Mice. Cell Metab. 2015 Aug 4;22(2):253-65. (PubMed)

Roy S, Saha TT, Johnson L, Zhao B, Ha J, White KP, Girke T, Zou Z, Raikhel AS. Regulation of Gene Expression Patterns in Mosquito Reproduction. PLoS Genet. 2015 Aug 14;11(8):e1005450. eCollection 2015 Aug. (PubMed)

Rubert Pérez CM, Stephanopoulos N, Sur S, Lee SS, Newcomb C, Stupp SI. The powerful functions of peptide-based bioactive matrices for regenerative medicine. Ann Biomed Eng. 2015 Mar;43(3):501-14. Review. (PubMed)

Russo A, Okur MN, Bosland M, O’Bryan JP. Phosphatidylinositol 3-kinase, class 2 beta (PI3KC2β) isoform contributes to neuroblastoma tumorigenesis. Cancer Lett. 2015 Apr 10;359(2):262-8. (PubMed)

Rust MJ. Computational Recipes in Enzymology. Cell Syst. 2015 Sep 23;1(3):178-179. (PubMed)

Rzhetsky A, Foster JG, Foster IT, Evans JA. Choosing experiments to accelerate collective discovery. Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14569-74. (PubMed)

Seiwert TY, Zuo Z, Keck MK, Khattri A, Pedamallu CS, Stricker TP, Brown CD, Pugh TJ, Stojanov P, Cho J, Lawrence M, Getz G, Bragelmann J, DeBoer R, Weichselbaum RR, Langerman A, Portugal LD, Blair EA, Stenson KM, Lingen MW, Cohen EE, Vokes EE, White KP, Hammerman PS. Integrative and comparative genomic analysis of HPV-positive and HPV-negative head and neck squamous cell carcinomas. Clin Cancer Res. 2015 Feb 1;21(3):632-41. (PubMed)

Sekar K, Tyo KE. Regulatory effects on central carbon metabolism from poly-3-hydroxybutryate synthesis. Metab Eng. 2015 Jan 15;28C:180-189. (PubMed)

Seok HS, Song T, Kong SW, Hwang KB. An Efficient Search Algorithm for Finding Genomic-Range Overlaps Based on the Maximum Range Length. IEEE/ACM Trans Comput Biol Bioinform. 2015 Jul-Aug;12(4):778-84. (PubMed)

Shade CM, Kennedy RD, Rouge JL, Rosen MS, Wang MX, Seo SE, Clingerman DJ, Mirkin CA. Duplex-selective ruthenium-based DNA intercalators. Chemistry. 2015 Jul 27;21(31):10983-7. (PubMed)

Shamirian A, Appelbe O, Zhang Q, Ganesh B, Kron SJ, Snee PT. A toolkit for bioimaging using near-infrared AgInS2/ZnS quantum dots. J. Mater. Chem. B. 2015 3:8188-8196. (pubs.rsc.org)

Shamirian A, Ghai A, Snee PT. QD-Based FRET Probes at a Glance. Review. Sensors (Basel). 2015 Jun 4;15(6):13028-13051. (PubMed)

Sheffield ME, Dombeck DA. Calcium transient prevalence across the dendritic arbour predicts place field properties. Nature. 2015 Jan 8;517(7533):200-4. (PubMed)

Sheffield ME, Dombeck DA. The binding solution? Nat Neurosci. 2015 Jul 28;18(8):1060-2. (PubMed)

Skinner OS, Do Vale LH, Catherman AD, Havugimana PC, Sousa MV, Compton PD, Kelleher NL. Native GELFrEE: A New Separation Technique for Biomolecular Assemblies. Anal Chem. 2015 Mar 3;87(5):3032-8. (PubMed)

Skinner OS, Kelleher NL. Illuminating the dark matter of shotgun proteomics. Nat Biotechnol. 2015 Jul 8;33(7):717-8. (PubMed)

Smith L, Kuiken T, Hargrove L. Linear regression using intramuscular EMG for simultaneous myoelectric control of a wrist and hand system. Neural Engineering (NER), 7th International IEEE/EMBS Conference on. 2015 Apr 22-24. Pp. 619-22. (ieee.org)

Smith LH, Kuiken TA, Hargrove LJ. Real-time simultaneous myoelectric control by transradial amputees using linear and probability-weighted regression. Conf Proc IEEE Eng Med Biol Soc. 2015 Aug;2015:1119-23. (PubMed)

Smith LH, Kuiken TA, Hargrove LJ. Use of probabilistic weights to enhance linear regression myoelectric control. J Neural Eng. 2015 Dec;12(6):066030. (PubMed)

Sobers CJ, Wood SE, Mrksich M. A gene expression-based comparison of cell adhesion to extracellular matrix and RGD-terminated monolayers. Biomaterials. 2015 Jun;52:385-94. (PubMed)

Spranger S, Bao R, Gajewski TF. Melanoma-intrinsic β-catenin signalling prevents anti-tumour immunity. Nature. 2015 Jul 9;523(7559):231-5. (PubMed)

Stuwe T, Bley CJ, Thierbach K, Petrovic S, Schilbach S, Mayo DJ, Perriches T, Rundlet EJ, Jeon YE, Collins LN, Huber FM, Lin DH, Paduch M, Koide A, Lu V, Fischer J, Hurt E, Koide S, Kossiakoff AA, Hoelz A. Architecture of the fungal nuclear pore inner ring complex. Science. 2015 Oct 2;350(6256):56-64. (PubMed)

Stuwe T, Correia AR, Lin DH, Paduch M, Lu VT, Kossiakoff AA, Hoelz A. Nuclear pores. Architecture of the nuclear pore complex coat. Science. 2015 Mar 6;347(6226):1148-52. (PubMed)

Sun W, Kewalramani S, Hujsak K, Zhang H, Bedzyk MJ, Dravid VP, Thaxton CS. Mesophase in a thiolate-containing diacyl phospholipid self-assembled monolayer. Langmuir. 2015 Mar 17;31(10):3232-41. (PubMed)

Takeuchi T, Schumacker PT, Kozmin SA. Identification of Fumarate Hydratase Inhibitors with Nutrient-Dependent Cytotoxicity. J Am Chem Soc. 2015 Jan 21;137(2):564-7. (PubMed)

Tan G, Shi F, Doak JW Sun H, Zhao LD, Wang P, Uher C, Wolverton C, Dravid VP, Kanatzidis MG. Extraordinary role of Hg in enhancing the thermoelectric performance of p-type SnTe. Energy Environ. Sci. 2015 8:267-277. (rsc.org)

Tang K, Wong S, Liu J, Zhang J, Liang J. Conformational Sampling and Structure Prediction of Multiple Interacting Loops in Soluble and β-Barrel Membrane Proteins Using Multi-Loop Distance-Guided Chain Growth Monte Carlo Method. Bioinformatics. 2015 May 13;137(18):5980-9. (PubMed)

Tang W, Li H, Doud EH, Chen Y, Choing S, Plaza C, Kelleher NL, Poulos TL, Silverman RB. Mechanism of Inactivation of Neuronal Nitric Oxide Synthase by (S)-2-Amino-5-(2-(methylthio)acetimidamido)pentanoic acid. J Am Chem Soc. 2015 May 13;137(18):5980-9. (PubMed)

Tatum MC, Ooi FK, Chikka MR, Chauve L, Martinez-Velazquez LA, Steinbusch HW, Morimoto RI, Prahlad V. Neuronal serotonin release triggers the heat shock response in C. elegans in the absence of temperature increase. Curr Biol. 2015 Jan 19;25(2):163-74. 31. (PubMed)

Teixeira-Castro A, Jalles A, Esteves S, Kang S, da Silva Santos L, Silva-Fernandes A, Neto MF, Brielmann RM, Bessa C, Duarte-Silva S, Miranda A, Oliveira S, Neves-Carvalho A, Bessa J, Summavielle T, Silverman RB, Oliveira P, Morimoto RI, Maciel P. Serotonergic signalling suppresses ataxin 3 aggregation and neurotoxicity in animal models of Machado-Joseph disease. Brain. 2015 Nov;138(Pt 11):3221-37. (PubMed)

Teven CM, Fisher S, Ameer GA, He TC, Reid RR. Biomimetic approaches to complex craniofacial defects. Ann Maxillofac Surg. 2015 Jan-Jun;5(1):4-13. Review. (PubMed)

Teven CM, Rossi MT, Shenaq DS, Ameer GA, Reid RR. Bone morphogenetic protein-9 effectively induces osteogenic differentiation of reversibly immortalized calvarial mesenchymal progenitor cells. Genes & Diseases. 2015 Sep;2(3): 268–275. (sciencedirect)

Thurber BW, Carmody D, Tadie EC, Pastore AN, Dickens JT, Wroblewski KE, Naylor RN, Philipson LH, Greeley SA; United States Neonatal Diabetes Working Group. Age at the time of sulfonylurea initiation influences treatment outcomes in KCNJ11-related neonatal diabetes. Diabetologia. 2015 Jul;58(7):1430-5. (PubMed)

Trent A, Ulery BD, Black MJ, Barrett JC, Liang S, Kostenko Y, David NA, Tirrell MV. Peptide amphiphile micelles self-adjuvant group A streptococcal vaccination. AAPS J. 2015 Mar;17(2):380-8. (PubMed)

Trubetskoy V, Rodriguez A, Dave U, Campbell N, Crawford EL, Cook EH, Sutcliffe JS, Foster I, Madduri R, Cox NJ, Davis LK. Consensus Genotyper for Exome Sequencing (CGES): Improving the Quality of Exome Variant Genotypes. Bioinformatics. 2015 Jan 15;31(2):187-93. (PubMed)

Vijayan BK, Schwartzenberg KC, Wu J, Gray KA. Phase stability and photoactivity of CuO modified titania nanotube prepared by hydrothermal method. Journal of Molecular Catalysis A: Chemical. 2015 Jun:402:23-28. (sciencedirect.com)

Viola KL, Sbarboro J, Sureka R, De M, Bicca MA, Wang J, Vasavada S, Satpathy S, Wu S, Joshi H, Velasco PT, MacRenaris K, Waters EA, Lu C, Phan J, Lacor P, Prasad P, Dravid VP, Klein WL. Towards non-invasive diagnostic imaging of early-stage Alzheimer’s disease. Nat Nanotechnol. 2015 Jan;10(1):91-8. (PubMed)

Vistain LF, Yamamoto N, Rathore R, Cha P, Meade TJ. Targeted Inhibition of Snail Activity in Breast Cancer Cells by Using a Co(III) -Ebox Conjugate. Chembiochem. 2015 Sep 21;16(14):2065-72. (PubMed)

Voce DJ, Schmitt AM, Uppal A, McNerney ME, Bernal GM, Cahill KE, Wahlstrom JS, Nassiri A, Yu X, Crawley CD, White KP, Onel K, Weichselbaum RR, Yamini B. Nfkb1 is a haploinsufficient DNA damage-specific tumor suppressor. Oncogene. 2015 May 21;34(21):2807-13. (PubMed)

Wallace EW, Kear-Scott JL, Pilipenko EV, Schwartz MH, Laskowski PR, Rojek AE, Katanski CD, Riback JA, Dion MF, Franks AM, Airoldi EM, Pan T, Budnik BA, Drummond DA. Reversible, Specific, Active Aggregates of Endogenous Proteins Assemble upon Heat Stress. Cell. 2015 Sep 10;162(6):1286-98. (PubMed)

Wang H, Lee DK, Chen KY, Chen JY, Zhang K, Silva A, Ho CM, Ho D. Mechanism-independent optimization of combinatorial nanodiamond and unmodified drug delivery using a phenotypically driven platform technology. ACS Nano. 2015 Mar 24;9(3):3332-44. (PubMed)

Wang J, Luo C, Shan C, You Q, Lu J, Elf S, Zhou Y, Wen Y, Vinkenborg JL, Fan J, Kang H, Lin R, Han D, Xie Y, Karpus J, Chen S, Ouyang S, Luan C, Zhang N, Ding H, Merkx M, Liu H, Chen J, Jiang H, He C. Inhibition of human copper trafficking by a small molecule significantly attenuates cancer cell proliferation. Nat Chem. 2015 Dec;7(12):968-79. (PubMed)

Wang MH, Cohen DT, Schwamb CB, Mishra RK, Scheidt KA. Enantioselective β-Protonation by a Cooperative Catalysis Strategy. J Am Chem Soc. 2015 May 13;137(18):5891-4. (PubMed)

Wang X, Bleher R, Brown ME, Garcia JG, Dudek SM, Shekhawat GS, Dravid VP. Nano-Biomechanical Study of Spatio-Temporal Cytoskeleton Rearrangements that Determine Subcellular Mechanical Properties and Endothelial Permeability. Sci Rep. 2015 Jun 18;5:11097. (PubMed)

Wasserman M, Zeng XH, Amaral LA. Cross-evaluation of metrics to estimate the significance of creative works. Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):1281-6. (PubMed)

Wells DK, Chuang Y, Knapp LM, Brockmann D, Kath WL, Leonard JN. Spatial and functional heterogeneities shape collective behavior of tumor-immune networks. PLoS Comput Biol. 2015 Apr 23;11(4):e1004181. eCollection 2015 Apr. (PubMed)

Wells DK, Kath WL, Motter AE. Control of Stochastic and Induced Switching in Biophysical Networks. Phys. Rev. 2015 Sep 16:X 5, 031036. (journals.aps.org)

Wen Y, Collier JH.  Supramolecular peptide vaccines: tuning adaptive immunity. Review. Curr Opin Immunol. 2015 Jul 7;35:73-79. (PubMed)

Werner MS, Ruthenburg AJ. Nuclear Fractionation Reveals Thousands of Chromatin-Tethered Noncoding RNAs Adjacent to Active Genes. Cell Rep. 2015 Aug 18;12(7):1089-98. (PubMed)

Wignall SM. Cell division: stem cells take the stage. Curr Biol. 2015 May 4;25(9):R376-8. (PubMed)

Wilcox KC, Marunde MR, Das A, Velasco PT, Kuhns BD, Marty MT, Jiang H, Luan CH, Sligar SG, Klein WL. Nanoscale Synaptic Membrane Mimetic Allows Unbiased High Throughput Screen That Targets Binding Sites for Alzheimer’s-Associated Aβ Oligomers. PLoS One. 2015 Apr 30;10(4):e0125263. eCollection 2015. (PubMed)

Wildburger NC, Lichti CF, LeDuc RD, Schmidt M, Kroes RA, Moskal JR, Nilsson CL. Quantitative Proteomics and Transcriptomics Reveals Metabolic Differences in Attracting and Non-Attracting Human-in-Mouse Glioma Stem Cell Xenografts and Stromal Cells. EuPA Open Proteomics. 2015 Sep;8:94–103. (sciencedirect)

Xu J, Wu J, Luo L, Chen X, Qin H, Dravid V, Mi S, Jia C. Co3O4 nanocubes homogeneously assembled on few-layer graphene for high energy density lithium-ion batteries. Journal of Power Sources. 2015 Jan 274:816-822. (sciencedirect.com)

Yalgin C, Ebrahimi S, Delandre C, Yoong LF, Akimoto S, Tran H, Amikura R, Spokony R, Torben-Nielsen B, White KP, Moore AW. Centrosomin represses dendrite branching by orienting microtubule nucleation. Nat Neurosci. 2015 Oct;18(10):1437-45. (PubMed)

Yao L, Li Y, Ghosh S, Evans JA, Rzhetsky A. Health ROI as a measure of misalignment of biomedical needs and resources. Nat Biotechnol. 2015 Aug;33(8):807-11. (PubMed)

Ye H, Wang J, Zhang Z, Jia C, Schmerberg CM, Catherman AD, Thomas PM, Kelleher NL, Li L. Defining the Neuropeptidome of the Spiny Lobster Panulirus interruptus Brain Using a Multi-Dimensional Mass Spectrometry-Based Platform. J Proteome Res. 2015 Nov 6;14(11):4776-91. (PubMed)

Yi J, Stypula-Cyrus Y, Blaha CS, Roy HK, Backman V. Fractal Characterization of Chromatin Decompaction in Live Cells. Biophys J. 2015 Dec 1;109(11):2218-26. (PubMed)

Youn SW, Varadarajan S, Das A, Surenkhuu B, Fukai T, Ushio-Fukai M. Novel Protective Role of Cu Transporter ATP7A Against Cardiac Fibrosis by Inhibiting Endothelial-Mesenchymal Transition Mediated Through Snail and Antioxidant-1. Circulation. 2015 132(Suppl 3), A13521-A13521. (circ.ahajournals.org)

Young DJ, Guydosh NR, Zhang F, Hinnebusch AG, Green R. Rli1/ABCE1 Recycles Terminating Ribosomes and Controls Translation Reinitiation in 3’UTRs In Vivo. Cell. 2015 Aug 13;162(4):872-84. (PubMed)

Yu D, Mathews CA, Scharf JM, (…), Cook EH, (…), Cox NJ, Pauls DL. Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette’s syndrome and OCD. Am J Psychiatry. 2015 Jan;172(1):82-93. (PubMed)

Yu M, Ji L, Neumann DA, Chung DH, Groom J, Westpheling J, He C, Schmitz RJ. Base-resolution detection of N4-methylcytosine in genomic DNA using 4mC-Tet-assisted-bisulfite- sequencing. Nucleic Acids Res. 2015 Dec 2;43(21):e148. (PubMed)

Yu M, Song CX, He C. Detection of mismatched 5-hydroxymethyluracil in DNA by selective chemical labeling. Methods. 2015 Jan 15;72:16-20. (PubMed)

Zelasko-Leon DC, Fuentes CM, Messersmith PB. MUC1-Targeted Cancer Cell Photothermal Ablation Using Bioinspired Gold Nanorods. PLoS One. 2015 Jul 6;10(7):e0128756. eCollection 2015. (PubMed)

Zha RH, Sur S, Boekhoven J, Shi HY, Zhang M, Stupp SI. Supramolecular assembly of multifunctional maspin-mimetic nanostructures as a potent peptide-based angiogenesis inhibitor. Acta Biomater. 2015 Jan;12:1-10. (PubMed)

Zhang C, Hao L, Calabrese CM, Zhou Y, Choi CH, Xing H, Mirkin CA. Biodegradable DNA-Brush Block Copolymer Spherical Nucleic Acids Enable Transfection Agent-Free Intracellular Gene Regulation. Small. 2015 Oct 28;11(40):5360-8. (PubMed)

Zhang S, Yeap XY, Grigoryeva L, Dehn S, DeBerge M, Tye M, Rostlund E, Schrijvers D, Zhang ZJ, Sumagin R, Tourtellotte WG, Lee D, Lomasney J, Morrow J, Thorp EB. Cardiomyocytes induce macrophage receptor shedding to suppress phagocytosis. J Mol Cell Cardiol. 2015 Aug 24;87:171-179. (PubMed)

Zheng G, Qin Y, Clark WC, Dai Q, Yi C, He C, Lambowitz AM, Pan T. Efficient and quantitative high-throughput tRNA sequencing. Nat Methods. 2015 Sep;12(9):835-7. (PubMed)

Zheng H, Kim J, Liew M, Yan JK, Herrera O, Bok JW, Kelleher NL, Keller NP, Wang Y. Redox Metabolites Signal Polymicrobial Biofilm Development via the NapA Oxidative Stress Cascade in Aspergillus. Curr Biol. 2015 Jan 5;25(1):29-37. (PubMed)

Zhong N, Loppnau P, Seitova A, Ravichandran M, Fenner M, Jain H, Bhattacharya A, Hutchinson A, Paduch M, Lu V, Olszewski M, Kossiakoff AA, Dowdell E, Koide A, Koide S, Huang H, Nadeem V, Sidhu SS, Greenblatt JF, Marcon E, Arrowsmith CH, Edwards AM, Gräslund S. Optimizing Production of Antigens and Fabs in the Context of Generating Recombinant Antibodies to Human Proteins. PLoS One. 2015 Oct 5;10(10):e0139695. eCollection 2015. (PubMed)

Zhu J, Mishra RK, Schiltz G, Makanji Y, Scheidt KA, Mazar A, Woodruff TK. Virtual High Throughput Screening to identify novel activin antagonists. J Med Chem. 2015 Jul 23;58(14):5637-48. (PubMed)

Zhu Y, Xu Y, Helseth DL Jr, Gulukota K, Yang S, Pesce LL, Mitra R, Müller P, Sengupta S, Guo W, Silverstein JC, Foster I, Parsad N, White KP, Ji Y. Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data. J Natl Cancer Inst. 2015 May 8;107(8). (PubMed)

Zimmerman JF, Murray GF, Tian B. Optical Determination of Silicon Nanowire Diameters for Intracellular Applications. J. Phys. Chem. C, 2015 119(52):29105-15. (pubs.acs.org)

Zimmerman JF, Murray GF, Wang Y, Jumper JM, Austin JR 2nd, Tian B. Free-Standing Kinked Silicon Nanowires for Probing Inter- and Intracellular Force Dynamics. Nano Lett. 2015 Aug 12;15(8):5492-8. (PubMed)

Zimmerman JF, Tian B. Injectable electronics as a modern day ‘ship in a bottle.’ NPG Asia Materials. 2015 7, e214. (www.nature.com)