CBC-Attributed Research Publications 2017

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Acar H, Srivastava S, Chung EJ, Schnorenberg MR, Barrett JC, LaBelle JL, Tirrell M. Self-assembling peptide-based building blocks in medical applications. Adv Drug Deliv Rev. 2017 Feb;110-111:65-79. Review. (PubMed)

Allen S, Osorio O, Liu YG, Scott E. Facile assembly and loading of theranostic polymersomes via multi-impingement flash nanoprecipitation. J Control Release. 2017 Jul 20;262:91-103. (PubMed)

Almassalha LM, Bauer GM, Wu W, Cherkezyan L, Zhang D, Kendra A, Gladstein S, Chandler JE, VanDerway D, Seagle BLL, Ugolkov A, Billadeau DD, O’Halloran TV, Mazar AP, Roy HK, Szleifer I, Shahabi S, Backman V. Macrogenomic engineering via modulation of the scaling of chromatin packing density. Nat Biomed Eng. 2017 Nov;1(11):902-913. (PubMed)

Almassalha LM, Tiwari A, Ruhoff PT, Stypula-Cyrus Y, Cherkezyan L, Matsuda H, Dela Cruz MA, Chandler JE, White C, Maneval C, Subramanian H, Szleifer I, Roy HK, Backman V. The Global Relationship between Chromatin Physical Topology, Fractal Structure, and Gene Expression. Sci Rep. 2017 Jan 24;7:41061. (PubMed)

Alves LGA, Winter PB, Ferreira LN, Brielmann RM, Morimoto RI, Amaral LAN. Long-range correlations and fractal dynamics in C. elegans: Changes with aging and stress. Phys Rev E. 2017 Aug;96(2-1):022417. (PubMed)

Anderson LC, DeHart CJ, Kaiser NK, Fellers RT, Smith DF, Greer JB, LeDuc RD, Blakney GT, Thomas PM, Kelleher NL, Hendrickson CL. Identification and Characterization of Human Proteoforms by Top-Down LC-21 Tesla FT-ICR Mass Spectrometry. J Proteome Res. 2017 Feb 3;16(2):1087-1096. (PubMed)

Aprison EZ, Ruvinsky I. Counteracting Ascarosides Act through Distinct Neurons to Determine the Sexual Identity of C. elegans Pheromones. Curr Biol. Sep 11;27(17):2589-2599.e3. (PubMed)

Arenas OM, Zaharieva EE, Para A, Vásquez-Doorman C, Petersen CP, Gallio M. Activation of planarian TRPA1 by reactive oxygen species reveals a conserved mechanism for animal nociception. Nat Neurosci. 2017 Dec;20(12):1686-1693. (PubMed)

Banga RJ, Krovi SA, Narayan SP, Sprangers AJ, Liu G, Mirkin CA, Nguyen ST. Drug-Loaded Polymeric Spherical Nucleic Acids: Enhancing Colloidal Stability and Cellular Uptake of Polymeric Nanoparticles through DNA Surface-Functionalization. Biomacromolecules. 2017 Feb 13;18(2):483-489. (PubMed)

Banigan EJ, Stephens AD, Marko JF. Mechanics and Buckling of Biopolymeric Shells and Cell Nuclei. Biophys J. 2017 Oct 17;113(8):1654-1663. (PubMed)

Barefield DY, Puckelwartz MJ, Kim EY, Wilsbacher LD, Vo AH, Waters EA, Earley JU, Hadhazy M, Dellefave-Castillo LM, Pesce LL, McNally EM. Experimental Modeling Supports a Role for MyBP-HL as a Novel Myofilament Component in Arrhythmia and Dilated Cardiomyopathy. Circulation. 2017 Oct 17;136(16):1477-1491. (PubMed)

Barrett JC, Ulery BD, Trent A, Liang S, David NA, Tirrell MV. Modular Peptide Amphiphile Micelles Improving an Antibody-Mediated Immune Response to Group A Streptococcus. ACS Biomater Sci Eng. 2017;3(2):144-152. (PubMed)

Basak SC, Mishra RK. Editorial: Descriptor Spaces for QSAR: Delving into the History of the Expanding Frontier. Curr Comput Aided Drug Des. 2017;13(1):4-7. (PubMed)

Bass JT. The circadian clock system’s influence in health and disease. Genome Med. 2017 Oct 31;9(1):94. (PubMed)

Basu A, Komazin-Meredith G, McCarthy C, Antanasijevic A, Cardinale SC, Mishra RK, Barnard DL, Caffrey M, Rong L, Bowlin TL. Molecular Mechanism Underlying the Action of Influenza A Virus Fusion Inhibitor MBX2546. ACS Infect Dis. 2017 May 12;3(5):330-335. (PubMed)

Bauer GM, Stypula-Cyrus Y, Subramanian H, Cherkezyan L, Viswanathan P, Zhang D, Iyengar R, Bagalkar S, Derbas J, Graff T, Gladstein S, Almassalha LM, Chandler JE, Roy HK, Backman V. The transformation of the nuclear nanoarchitecture in human field carcinogenesis. Future Sci OA. 2017 May 5;3(3):FSO206. Review. (PubMed)

Baumgarten SC, Armouti M, Ko C, Stocco C. IGF1R Expression in Ovarian Granulosa Cells is Essential for Steroidogenesis, Follicle Survival, and Fertility in Female Mice. Endocrinology. 2017 Jul 1;158(7):2309-2318. (PubMed)

Beck M, Kathayat R, Cham C, Chang E, Dickinson B. Michael addition-based probes for ratiometric fluorescence imaging of protein S-depalmitoylases in live cells and tissues. Chem. Sci. Chem Sci. 2017 Nov 1;8(11):7588-7592. (PubMed)

Belaghzal H, Dekker J, Gibcus JH. Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation. Methods. 2017 Jul 1;123:56-65. (PubMed)

Biancucci M, Dolores JS, Wong J, Grimshaw S, Anderson WF, Satchell KJ, Kwon K. New ligation independent cloning vectors for expression of recombinant proteins with a self-cleaving CPD/6xHis-tag. BMC Biotechnol. 2017 Jan 5;17(1):1. (PubMed)

Bondoc JMG, Wolf NM, Ndichuck M, Abad-Zapatero C, Movahedzadeh F. Mutagenesis of threonine to serine in the active site of Mycobacterium tuberculosis fructose-1,6-bisphosphatase (Class II) retains partial enzyme activity. Biotechnol Rep (Amst). 2017 Jun 15;15:48-54. eCollection 2017 Sep. (PubMed)

Brahmachari S, Gunn KH, Giuntoli RD, Mondragón A, Marko JF. Nucleation of Multiple Buckled Structures in Intertwined DNA Double Helices. Phys Rev Lett. 2017 Nov 3;119(18):188103. (PubMed)

Brahmachari S, Marko JF. Torque and buckling in stretched intertwined double-helix DNAs. Phys Rev E. 2017 May;95(5-1):052401. (PubMed)

Bristow G, Nwabuisi-Heath E, Dong E, Guidotti A, Sodhi M. Altered RNA Editing and Behavior in Prenatally Stressed Mice are Reversed by Clozapine. Biological Psychiatry. 15 May 2017 vol. 81:10 Supplement:S3. (BPSJ)

Bristow G, Sodhi M. AMPA receptor RNA editing may alleviate the long-term effects of prenatal stress. The FASEB Journal. April 2017 vol. 31 no. 1 Supplement 988.7. (fasebj.org)

Broussard JA, Yang R, Huang C, Nathamgari SSP, Beese AM, Godsel LM, Hegazy MH, Lee S, Zhou F, Sniadecki NJ, Green KJ, Espinosa HD. The desmoplakin/intermediate filament linkage regulates cell mechanics. Mol Biol Cell. 2017 Nov 7;28(23):3156-3164. (PubMed)

Budde MD, Skinner NP, Muftuler LT, Schmit BD, Kurpad SN. Optimizing Filter-Probe Diffusion Weighting in the Rat Spinal Cord for Human Translation. Front Neurosci. 2017 Dec 19;11:706. eCollection 2017. (PubMed)

Budinger GRS, Kohanski RA, Gan W, Kobor MS, Amaral LA, Armanios M, Kelsey KT, Pardo A, Tuder R, Macian F, Chandel N, Vaughan D, Rojas M, Mora AL, Kovacs E, Duncan SR, Finkel T, Choi A, Eickelberg O, Chen D, Agusti A, Selman M, Balch WE, Busse P, Lin A, Morimoto R, Sznajder JI, Thannickal VJ. The Intersection of Aging Biology and the Pathobiology of Lung Diseases: A Joint NHLBI/NIA Workshop. J Gerontol A Biol Sci Med Sci. 2017 Oct 12;72(11):1492-1500. Review. (PubMed)

Cabezas MD, Mirkin CA, Mrksich M. Nanopatterned Extracellular Matrices Enable Cell-Based Assays with a Mass Spectrometric Readout. Nano Lett. 2017 Mar 8;17(3):1373-1377. (PubMed)

Calik MW, Carley DW. Co-Localization of Serotonin and Cannabinoid Receptors in the Nodose Ganglia. Sleep (2017) 40 (suppl_1): A52. (academic.oup.com)

Calvert AE, Chalastanis A, Wu Y, Hurley LA, Kouri FM, Bi Y, Kachman M, May JL, Bartom E, Hua Y, Mishra RK, Schiltz GE, Dubrovskyi O, Mazar AP, Peter ME, Zheng H, James CD, Burant CF, Chandel NS, Davuluri RV, Horbinski C, Stegh AH. Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation. Cell Rep. 2017 May 30;19(9):1858-1873. (PubMed)

Chandler JE, Stypula-Cyrus Y, Almassalha L, Bauer G, Bowen L, Subramanian H, Szleifer I, Backman V. Colocalization of cellular nanostructure using confocal fluorescence and partial wave spectroscopy. J Biophotonics. 2017 Mar;10(3):377-384. (PubMed)

Chen PC, Du JS, Meckes B, Huang L, Xie Z, Hedrick JL, Dravid VP, Mirkin CA. Structural Evolution of Three-Component Nanoparticles in Polymer Nanoreactors. J Am Chem Soc. 2017 Jul 26;139(29):9876-9884. (PubMed)

Chen R, Davis LK, Guter S, Wei Q, Jacob S, Potter MH, Cox NJ, Cook EH, Sutcliffe JS, Li B. Leveraging blood serotonin as an endophenotype to identify de novo and rare variants involved in autism. Mol Autism. 2017 Mar 21;8:14. eCollection 2017. (PubMed)

Cheng J, Demeulemeester J, Wedge DC, Vollan HKM, Pitt JJ, Russnes HG, Pandey BP, Nilsen G, Nord S, Bignell GR, White KP, Børresen-Dale AL, Campbell PJ, Kristensen VN, Stratton MR, Lingjærde OC, Moreau Y, Loo PV. Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors. Nat Commun. 2017 Oct 31;8(1):1221. (PubMed)

Cherkezyan L, Zhang D, Subramanian H, Capoglu I, Taflove A, Backman V. Review of interferometric spectroscopy of scattered light for the quantification of subdiffractional structure of biomaterials. J Biomed Opt. 2017 Mar 1;22(3):30901. (PubMed)

Chetnani B, Mondragón A. Molecular envelope and atomic model of an anti-terminated glyQS T-box regulator in complex with tRNAGly. Nucleic Acids Res. 2017 Jul 27;45(13):8079-8090. (PubMed)

Chhibber A, French CE, Yee SW, Gamazon ER, Theusch E, Qin X, Webb A, Papp AC, Wang A, Simmons CQ, Konkashbaev A, Chaudhry AS, Mitchel K, Stryke D, Ferrin TE, Weiss ST, Kroetz DL, Sadee W, Nickerson DA, Krauss RM, George AL, Schuetz EG, Medina MW, Cox NJ, Scherer SE, Giacomini KM, Brenner SE. Transcriptomic variation of pharmacogenes in multiple human tissues and lymphoblastoid cell lines. Pharmacogenomics J. 2017 Mar;17(2):137-145. (PubMed)

Chinen AB, Guan CM, Ko CH, Mirkin CA. The Impact of Protein Corona Formation on the Macrophage Cellular Uptake and Biodistribution of Spherical Nucleic Acids. Small. 2017 Apr;13(16). (PubMed)

Cho S, Chlipala G, Green S, Lee H, Jeong H. Differential gut microbiota modulates the susceptibility to acetaminophen-induced hepatotoxicity. The FASEB Journal. April 2017 vol. 31 no. 1 Supplement 668.11. (fasebj.org)

Cho S, Park W, Gordon A, Gates V, Lewandowski R, Salem R, Larson A, Kim D. Bimetal nano-radiosensitizers for 90Y radioembolization. Journal of Vascular and Interventional Radiology, Volume 28, Issue 2, Supplement, February 2017, Page S10. (www.jvir.org)

Cho S, Tripathi A, Chlipala G, Green S, Lee H, Chang EB, Jeong H. Fructose diet alleviates acetaminophen-induced hepatotoxicity in mice. PLoS ONE. 2017 Aug 23;12(8):e0182977. eCollection 2017. (PubMed)

Ciryam P, Lambert-Smith IA, Bean DM, Freer R, Cid F, Tartaglia GG, Saunders DN, Wilson MR, Oliver SG, Morimoto RI, Dobson CM, Vendruscolo M, Favrin G, Yerbury JJ. Spinal motor neuron protein supersaturation patterns are associated with inclusion body formation in ALS. Proc Natl Acad Sci U S A. 2017 May 16;114(20):E3935-E3943. (PubMed)

Cleland TP, DeHart CJ, Fellers RT, VanNispen AJ, Greer JB, LeDuc RD, Parker WR, Thomas PM, Kelleher NL, Brodbelt JS. High-Throughput Analysis of Intact Human Proteins Using UVPD and HCD on an Orbitrap Mass Spectrometer. J Proteome Res. 2017 May 5;16(5):2072-2079. (PubMed)

Clevenger KD, Bok JW, Ye R, Miley GP, Verdan MH, Velk T, Chen C, Yang K, Robey MT, Gao P, Lamprecht M, Thomas PM, Islam MN, Palmer JM, Wu CC, Keller NP, Kelleher NL. A scalable platform to identify fungal secondary metabolites and their gene clusters. Nat Chem Biol. 2017 Aug;13(8):895-901. (PubMed)

Clevenger KD, Mascarenhas R, Catlin D, Wu R, Kelleher NL, Drake EJ, Gulick AM, Liu D, Fast W. Substrate Trapping in the Siderophore Tailoring Enzyme PvdQ. ACS Chem Biol. 2017 Mar 17;12(3):643-647. (PubMed)

Cook DE, Andersen EC. VCF-kit: assorted utilities for the variant call format. Bioinformatics. 2017 May 15;33(10):1581-1582. (PubMed)

Cook DE, Zdraljevic S, Roberts JP, Andersen EC. CeNDR, the Caenorhabditis elegans natural diversity resource. Nucleic Acids Res. 2017 Jan 4;45(D1):D650-D657. (PubMed)

Cui Q, Shi H, Ye P, Li L, Qu Q, Sun G, Sun G, Lu Z, Huang Y, Yang CG, Riggs AD, He C, Shi Y. m6A RNA Methylation Regulates the Self-Renewal and Tumorigenesis of Glioblastoma Stem Cells. Cell Rep. 2017 Mar 14;18(11):2622-2634. (PubMed)

Cybulski TR, Boyden ES, Church GM, Tyo KEJ, Kording KP. Nucleotide-time alignment for molecular recorders. PLoS Comput Biol. 2017 May 1;13(5):e1005483. eCollection 2017 May. (PubMed)

Czyż DM, Willett J, Crosson S. Brucella abortus induces a Warburg shift in host metabolism that enhances intracellular replication of the pathogen. J Bacteriol. 2017 Jul 11;199(15). (PubMed)

D’Auria L, Reiter C, Ward E, Moyano AL, Marshall MS, Nguyen D, Scesa G, Hauck Z, van Breemen R, Givogri MI, Bongarzone ER. Psychosine enhances the shedding of membrane microvesicles: Implications in demyelination in Krabbe’s disease. PLoS One. 2017 May 22;12(5):e0178103. eCollection 2017. (PubMed)

Dai Q, Moshitch-Moshkovitz S, Han D, Kol N, Amariglio N, Rechavi G, Dominissini D, He C. Nm-seq maps 2′-O-methylation sites in human mRNA with base precision. Nat Methods. 2017 Jul;14(7):695-698. (PubMed)

Dai Q, Zheng G, Schwartz MH, Clark WC, Pan T. Selective Enzymatic Demethylation of N2 ,N2 -Dimethylguanosine in RNA and Its Application in High-Throughput tRNA Sequencing. Angew Chem Int Ed Engl. 2017 Apr 24;56(18):5017-5020. (PubMed)

Davis-Roca AC, Muscat CC, Wignall SM. Caenorhabditis elegans oocytes detect meiotic errors in the absence of canonical end-on kinetochore attachments. J Cell Biol. 2017 May 1;216(5):1243-1253. (PubMed)

Day KJ, La Rivière PJ, Chandler T, Bindokas VP, Ferrier NJ, Glick BS. Improved deconvolution of very weak confocal signals. Version 2. F1000Res. 2017 Jun 6 [revised 2017 Jan 1];6:787. eCollection 2017. (PubMed)

DeBerge M, Yeap XY, Dehn S, Zhang S, Grigoryeva LS, Misener S, Procissi D, Zhou X, Lee DC, Muller WA, Luo X, Rothlin C, Tabas I, Thorp EB. MerTK Cleavage on Resident Cardiac Macrophages Compromises Repair after Myocardial Ischemia Reperfusion Injury. Circ Res. 2017 Sep 29;121(8):930-940. (PubMed)

DeBerge M, Shuang Zhang S, Glinton K, Grigoryeva L, Hussein I, Vorovich E, Ho K, Luo X, B. Thorp EB. Efferocytosis and Outside-In Signaling by Cardiac Phagocytes. Links to Repair, Cellular Programming, and Intercellular Crosstalk in Heart. Front Immunol. 2017 Nov 1;8:1428. (PubMed)

Dechery JB, MacLean JN. Emergent cortical circuit dynamics contain dense, interwoven ensembles of spike sequences. J Neurophysiol. 2017 Sep 1;118(3):1914-1925. (PubMed)

DeHart CJ, Fellers RT, Fornelli L, Kelleher NL, Thomas PM. Bioinformatics Analysis of Top-Down Mass Spectrometry Data with ProSight Lite. Methods Mol Biol. 2017;1558:381-394. (PubMed)

Deibler KK, Mishra RK, Clutter MR, Antanasijevic A, Bergan R, Caffrey M, Scheidt KA. A Chemical Probe Strategy for Interrogating Inhibitor Selectivity Across the MEK kinase Family. ACS Chem Biol. 2017 May 19;12(5):1245-1256. (PubMed)

DiCorato AE, O’Halloran TV, Joester D. A Correlative Cryo-Fluorescence and CryoSEM Approach for Visualizing Nanomaterials in Glioblastoma Tissue. Microscopy and Microanalysis. 2017 23(S1), 1278-1279. (doi.org)

DiCorato AE, O’Halloran TV, Joester D. A Correlative Cryo-Fluorescence and CryoSEM Approach for Visualizing Nanomaterials in Glioblastoma Tissue. Microscopy and Microanalysis. 2017 23(S1), 1278-1279. (doi.org)

Dittmore A, Brahmachari S, Takagi Y, Marko JF, Neuman KC. Supercoiling DNA Locates Mismatches. Phys Rev Lett. 2017 Oct 6;119(14):147801. (PubMed)

Dolan ME, El Charif O, Wheeler HE, Gamazon ER, Ardeshir-Rouhani-Fard S, Monahan P, Feldman DR, Hamilton RJ, Vaughn DJ, Beard CJ, Fung C, Kim J, Fossa SD, Hertz DL, Mushiroda T, Kubo M, Einhorn LH, Cox NJ, Travis LB; Platinum Study Group. Clinical and Genome-Wide Analysis of Cisplatin-Induced Peripheral Neuropathy in Survivors of Adult-Onset Cancer. Clin Cancer Res. 2017 Oct 1;23(19):5757-5768. (PubMed)

Dong B, Almassalha LM, Soetikno BT, Chandler JE, Nguyen TQ, Urban BE, Sun C, Zhang HF, Backman V. Stochastic fluorescence switching of nucleic acids under visible light illumination. Opt Express. 2017 Apr 3;25(7):7929-7944. (PubMed)

Du JS, Chen PC, Meckes B, Xie Z, Zhu J, Liu Y, Dravid VP, Mirkin CA. The Structural Fate of Individual Multicomponent Metal-Oxide Nanoparticles in Polymer Nanoreactors. Angew Chem Int Ed Engl. 2017 Jun 19;56(26):7625-7629. (PubMed)

du Lac M, Scarpelli AH, Younger AK, Bates DG, Leonard JN. Predicting the Dynamics and Heterogeneity of Genomic DNA Content within Bacterial Populations across Variable Growth Regimes. ACS Synth Biol. 2017 Jul 21;6(7):1131-1139. (PubMed)

Dumanian ZP, Tollemar V, Ye J, Lu M, Zhu Y, Liao J, Ameer GA, He TC, Reid RR. Repair of critical sized cranial defects with BMP9-transduced calvarial cells delivered in a thermoresponsive scaffold. PLoS One. 2017 Mar 1;12(3):e0172327. (PubMed)

Edupuganti RR, Geiger S, Lindeboom RGH, Shi H, Hsu PJ, Lu Z, Wang SY, Baltissen MPA, Jansen PWTC, Rossa M, Müller M, Stunnenberg HG, He C, Carell T, Vermeulen M. N6-methyladenosine (m6A) recruits and repels proteins to regulate mRNA homeostasis. Nat Struct Mol Biol. 2017 Oct;24(10):870-878. (PubMed)

Elegheert J, Cvetkovska V, Clayton AJ, Heroven C, Vennekens KM, Smukowski SN, Regan MC, Jia W, Smith AC, Furukawa H, Savas JN, de Wit J, Begbie J, Craig AM, Aricescu AR. Structural Mechanism for Modulation of Synaptic Neuroligin-Neurexin Signaling by MDGA Proteins. Neuron. 2017 Aug 16;95(4):896-913.e10. (PubMed)

Elegheert J, Cvetkovska V, Clayton AJ, Heroven C, Vennekens KM, Smukowski SN, Regan MC, Jia W, Smith AC, Furukawa H, Savas JN, de Wit J, Begbie J, Craig AM, Aricescu AR. Structural Mechanism for Modulation of Synaptic Neuroligin-Neurexin Signaling by MDGA Proteins. Neuron. 2017 Aug 16;95(4):896-913.e10. (PubMed)

Erclik T, Li X, Courgeon M, Bertet C, Chen Z, Baumert R, Ng J, Koo C, Arain U, Behnia R, del Valle Rodriguez A, Senderowicz L, Negre N, White KP, Desplan C. Integration of temporal and spatial patterning generates neural diversity. Nature. 2017 Jan 19;541(7637):365-370. (PubMed)

Eren M, Place AT, Thomas PM, Flevaris P, Miyata T, Vaughan DE. PAI-1 is a critical regulator of FGF23 homeostasis. Sci Adv. 2017 Sep 13;3(9):e1603259. eCollection 2017 Sep. (PubMed)

Evans KS, Zhao Y, Brady SC, Long L, McGrath PT, Andersen EC. Correlations of Genotype with Climate Parameters Suggest Caenorhabditis elegans Niche Adaptations. G3 (Bethesda). 2017 Jan 5;7(1):289-298. (PubMed)

Evans ME, Clark WC, Zheng G, Pan T. Determination of tRNA aminoacylation levels by high-throughput sequencing. Nucleic Acids Res. 2017 Aug 21;45(14):e133. (PubMed)

Ezponda T, Dupéré-Richer D, Will CM, Small EC, Varghese N, Patel T, Nabet B, Popovic R, Oyer J, Bulic M, Zheng Y, Huang X, Shah MY, Maji S, Riva A, Occhionorelli M, Tonon G, Kelleher N, Keats J, Licht JD. UTX/KDM6A Loss Enhances the Malignant Phenotype of Multiple Myeloma and Sensitizes Cells to EZH2 inhibition. Cell Rep. 2017 Oct 17;21(3):628-640. (PubMed)

Feiglin A, Allen BK, Kohane IS, Kong SW. Comprehensive Analysis of Tissue-wide Gene Expression and Phenotype Data Reveals Tissues Affected in Rare Genetic Disorders. Cell Syst. 2017 Aug 23;5(2):140-148.e2. (PubMed)

Feng Q, Shen Y, Fu Y, Muroski ME, Zhang P, Wang Q, Xu C, Lesniak MS, Li G, Cheng Y. Self-Assembly of Gold Nanoparticles Shows Microenvironment-Mediated Dynamic Switching and Enhanced Brain Tumor Targeting. Theranostics. 2017 Apr 10;7(7):1875-1889. (PubMed)

Foote PK, Krist DT, Statsyuk AV. High-Throughput Screening of HECT E3 Ubiquitin Ligases Using UbFluor. Curr Protoc Chem Biol. 2017 Sep 14;9(3):174-195. (PubMed)

Fornelli L, Durbin KR, Fellers RT, Early BP, Greer JB, LeDuc RD, Compton PD, Kelleher NL. Advancing Top-down Analysis of the Human Proteome Using a Benchtop Quadrupole-Orbitrap Mass Spectrometer. J Proteome Res. 2017 Feb 3;16(2):609-618. (PubMed)

Fudenberg G, Abdennur N, Imakaev M, Goloborodko A, Mirny LA. Emerging Evidence of Chromosome Folding by Loop Extrusion. Cold Spring Harb Symp Quant Biol. 2017;82:45-55. (PubMed)

French AR, Sosnick TR, Rock RS. Investigations of human myosin VI targeting using optogenetically controlled cargo loading. Proc Natl Acad Sci U S A. 2017 Feb 28;114(9):E1607-E1616. (PubMed)

Gallik KL, Treffy RW, Nacke LM, Ahsan K, Rocha M, Green-Saxena A, Saxena A. Neural crest and cancer: Divergent travelers on similar paths. Review. Mech Dev. 2017 Dec;148:89-99. (PubMed)

Gan R, Perez JG, Carlson ED, Ntai I, Isaacs FJ, Kelleher NL, Jewett MC. Translation system engineering in Escherichia coli enhances non-canonical amino acid incorporation into proteins. Biotechnol Bioeng. 2017 May;114(5):1074-1086. (PubMed)

García-González AP, Ritter AD, Shrestha S, Andersen EC, Yilmaz LS, Walhout AJM. Bacterial Metabolism Affects the C. elegans Response to Cancer Chemotherapeutics. Cell. 2017 Apr 20;169(3):431-441.e8. (PubMed)

Gatto RG, Li W, Morfini GA, Magin RL. Diffusion Tensor Imaging Studies Identify Presymptomatic Axonal Degeneration in the Spinal Cord of an ALS Mouse Model. In: ISMRM 25th Annual Meeting & Exhibition. 2017 Jan 22. (www.ismrm.org)

Gebhardt MJ, Jacobson RK, Shuman HA. Seeing red; the development of pON.mCherry, a broad-host range constitutive expression plasmid for Gram-negative bacteria. PLoS One. 2017 Mar 3;12(3):e0173116. eCollection 2017. (PubMed)

Gebhardt MJ, Shuman HA. GigA and GigB are Master Regulators of Antibiotic Resistance, Stress Responses and Virulence in Acinetobacter baumannii. J Bacteriol. 2017 Apr 25;199(10). (PubMed)

Geeleher P, Huang RS. Exploring the Link between the Germline and Somatic Genome in Cancer. Cancer Discov. 2017 Apr;7(4):354-355. (PubMed)

Geeleher P, Zhang Z, Wang F, Gruener RF, Nath A, Morrison G, Bhutra S, Grossman RL, Huang RS. Discovering novel pharmacogenomic biomarkers by imputing drug response in cancer patients from large genomics studies. Genome Res. 2017 Oct;27(10):1743-1751. (PubMed)

Goering AW, Li J, McClure RA, Thomson RJ, Jewett MC, Kelleher NL. In vitro Reconstruction of Nonribosomal Peptide Biosynthesis Directly from DNA Using Cell-Free Protein Synthesis. ACS Synth Biol. 2017 Jan 20;6(1):39-44. (PubMed)

Gorman KT, Roby LC, Giuffre A, Huang R, Kay BK. Tandem phage-display for the identification of non-overlapping binding pairs of recombinant affinity reagents. Nucleic Acids Res. 2017 Oct 13;45(18):e158. (PubMed)

Greer SM, Holden DD, Fellers R, Kelleher NL, Brodbelt JS. Modulation of Protein Fragmentation Through Carbamylation of Primary Amines. J Am Soc Mass Spectrom. 2017 Aug;28(8):1587-1599. (PubMed)

Grigera F, Wuerffel R, Kenter AL. MBD4 facilitates immunoglobulin class switch recombination. Mol Cell Biol. 2017 Jan 4;37(2). (PubMed)

Grossman RL, Abel B, Angiuoli S, (…) Leiman LC. Collaborating to Compete: Blood Profiling Atlas in Cancer (BloodPAC) Consortium. Clin Pharmacol Ther. 2017 May;101(5):589-592. Review. (PubMed)

Guerrier S, Plattner H, Richardson EH, Dacks JB, Turkewitz AP. An evolutionary balance: conservation vs. innovation in ciliate membrane trafficking. Traffic. 2017 Jan;18(1):18-28. Review. (PubMed)

Gunn KH, Marko JF, Mondragón A. An orthogonal single-molecule experiment reveals multiple-attempt dynamics of type IA topoisomerases. Nat Struct Mol Biol. 2017 May;24(5):484-490. (PubMed)

Guo Y, Cho S, Chung E, Park JS, Jeong H. Structural differences in gut microbiota lead to altered hepatic expression of Drug Disposition Genes (DDG) in mice. The FASEB Journal. April 2017 vol. 31 no. 1 Supplement 668.3. (fasebj.org)

Gutka HJ, Wolf NM, Bondoc JMG, Movahedzadeh F. Enzymatic Characterization of Fructose 1,6-Bisphosphatase II from Francisella tularensis, an Essential Enzyme for Pathogenesis. Appl Biochem Biotechnol. 2017 Dec;183(4):1439-1454. (PubMed)

Gürsoy G, Xu Y, Kenter AL, Liang J. Computational construction of 3D chromatin ensembles and prediction of functional interactions of alpha-globin locus from 5C data. 2017. Nucleic Acids Res. 2017 Nov 16;45(20):11547-11558. (PubMed)

Gürsoy G, Xu Y, Liang J. Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model. PLoS Comput Biol. 2017 Jul 13;13(7):e1005658. eCollection 2017 Jul. (PubMed)

Han Y, Heuermann RJ, Lyman KA, Fisher D, Ismail Q-A, Chetkovich DM. HCN-channel dendritic targeting requires bipartite interaction with TRIP8b and regulates antidepressant-like behavioral effects. Mol Psychiatry. 2017 Mar;22(3):458-465. (PubMed)

Han Y, Yan C, Nguyen THD, Jackobel AJ, Ivanov I, Knutson BA, He Y. Structural mechanism of ATP-independent transcription initiation by RNA polymerase I. Elife. 2017 Jun 17;6. (PubMed)

Harada BT, He C. Epigenetics: Making your mark on DNA. Nat Chem. 2017 Oct 24;9(11):1040-1042. (PubMed)

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