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Alhasan AH, Scott AW, Wu JJ, Feng G, Meeks JJ, Thaxton CS, Mirkin CA. Circulating microRNA signature for the diagnosis of very high-risk prostate cancer. Proc Natl Acad Sci U S A. 2016 Sep 20;113(38):10655-60. (PubMed)
Almassalha LM, Bauer GM, Chandler JE, Gladstein S, Cherkezyan L, Stypula-Cyrus Y, Weinberg S, Zhang D, Thusgaard Ruhoff P, Roy HK, Subramanian H, Chandel NS, Szleifer I, Backman V. Label-free imaging of the native, living cellular nanoarchitecture using partial-wave spectroscopic microscopy. Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):E6372-E6381. (PubMed)
Almassalha LM, Bauer GM, Chandler JE, Gladstein S, Szleifer I, Roy HK, Backman V. The Greater Genomic Landscape: The Heterogeneous Evolution of Cancer. Cancer Res. 2016 Oct 1;76(19):5605-5609. (PubMed)
Anderson LL, Berns EJ, Bugga P, George AL Jr, Mrksich M. Measuring Drug Metabolism Kinetics and Drug-Drug Interactions Using Self-Assembled Monolayers for Matrix-Assisted Laser Desorption-Ionization Mass SpectromAnal Chem. 2016 Sep 6;88(17):8604-9. (PubMed)
Anderson GM, Cook EH Jr. Commentary on “Platelet Studies in Autism Spectrum Disorder Patients and First-Degree Relatives”. Mol Autism. 2016 Mar 29;7:20. eCollection 2016. (PubMed)
Angeloni NL, McMahon KM, Swaminathan S, Plebanek MP, Osman I, Volpert OV, Thaxton CS. Pathways for Modulating Exosome Lipids Identified By High-Density Lipoprotein-Like Nanoparticle Binding to Scavenger Receptor Type B-1. Sci Rep. 2016 Mar 11;6:22915. (PubMed)
Antanasijevic A, Hafeman NJ, Tundup S, Kingsley CN, Mishra RK, Rong L, Manicassamy B, Wardrop DJ, Caffrey MS. Stabilization and improvement of a promising influenza antiviral: Making a PAIN PAINless. ACS Infect Dis. 2016 Sep 9;2(9):608-615. (PubMed)
Antanasijevic A, Kingsley C, Basu A, Bowlin TL, Rong L, Caffrey M. Application of virus-like particles (VLP) to NMR characterization of viral membrane protein interactions. J Biomol NMR. 2016 Mar;64(3):255-65. (PubMed)
Applebaum MA, Jha AR, Kao C, Hernandez KM, DeWane G, Salwen HR, Chlenski A, Dobratic M, Mariani CJ, Godley LA, Prabhakar N, White K, Stranger BE, Cohn SL. Integrative genomics reveals hypoxia inducible genes that are associated with a poor prognosis in neuroblastoma patients. Oncotarget. 2016 Nov 22;7(47):76816-76826. (PubMed)
Aprison EZ, Ruvinsky I. Sexually Antagonistic Male Signals Manipulate Germline and Soma of C. elegans Hermaphrodites. Curr Biol. 2016 Oct 24;26(20):2827-2833. (PubMed)
Asada K, Canestrari E, Paroo Z. A druggable target for rescuing microRNA defects. Bioorg Med Chem Lett. 2016 Oct 15;26(20):4942-4946. (PubMed)
Bagley SC, Altman RB. Computing disease incidence, prevalence and comorbidity from electronic medical records. J Biomed Inform. 2016 Oct;63:108-111. (PubMed)
Bagley SC, Sirota M, Chen R, Butte AJ, Altman RB. Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants. PLoS Comput Biol. 2016 Apr 26;12(4):e1004885. doi: 10.1371/journal.pcbi.1004885. eCollection 2016 Apr. (PubMed)
Banigan EJ, Marko JF. Self-propulsion and interactions of catalytic particles in a chemically active medium. Phys Rev E. 2016 Jan;93(1):012611. (PubMed)
Banigan EJ, Marko JF. Erratum: Torque correlation length and stochastic twist dynamics of DNA [Phys. Rev. E 89, 062706 (2014)]. Phys Rev E. 2016 Apr;93(4-2):049904. (PubMed)
Barbeira A, Shah KP, Torres JM, Wheeler HE, Torstenson ES, Edwards T, Garcia T, Bell GI, Nicolae D, Cox NJ, Im HK. MetaXcan: Summary Statistics Based Gene-Level Association Method Infers Accurate PrediXcan Results. bioRxiv. Preprint first posted online Mar. 23, 2016. (biorxiv.org)
Barnaby SN, Perelman GA, Kohlstedt KL, Chinen AB, Schatz GC, Mirkin CA. Design Considerations for RNA Spherical Nucleic Acids (SNAs). Bioconjug Chem. 2016 Sep 21;27(9):2124-31. (PubMed)
Bass J. Targeting Time in Metabolic Therapeutics. Cell Metab. 2016 Apr 12;23(4):575-7. (PubMed)
Bass J, Lazar MA. Circadian time signatures of fitness and disease. Science. 2016 Nov 25;354(6315):994-999. Review. (PubMed)
Beiser D, Vu M, Gibbons R. Test-Retest Reliability of a Computerized Adaptive Depression Screener. Psychiatr Serv. 2016 Sep 1;67(9):1039-41. (PubMed)
Below JE, Parra EJ, Gamazon ER, Torres J, Krithika S, Candille S, Lu Y, Manichakul A, Peralta-Romero J, Duan Q, Li Y, Morris AP, Gottesman O, Bottinger E, Wang XQ, Taylor KD, Ida Chen YD, Rotter JI, Rich SS, Loos RJ, Tang H, Cox NJ, Cruz M, Hanis CL, Valladares-Salgado A. Meta-analysis of lipid-traits in Hispanics identifies novel loci, population-specific effects, and tissue-specific enrichment of eQTLs. Sci Rep. 2016 Jan 19;6:19429. (PubMed)
Bercich RA, Wang A, Mei H, Hammer LH, Seburn KL, Hargrove LJ, Irazoqui PP. Enhancing the versatility of myoelectric prosthetic control through fully wireless chronic acquisition of biopotentials. J Neural Eng. 2016 13:4 046012. (PubMed)
Berni Canani R, Sangwan N, Stefka AT, Nocerino R, Paparo L, Aitoro R, Calignano A, Khan AA, Gilbert JA, Nagler CR. Lactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants. ISME J. 2016 Mar;10(3):742-50. (PubMed)
Berns EJ, Cabezas MD, Mrksich M. Cellular Assays with a Molecular Endpoint Measured by SAMDI Mass Spectrometry. Small. 2016 Jul;12(28):3811-8. (PubMed)
Berth SH, Mesnard-Hoaglin N, Wang B, Kim H, Song Y, Sapar M, Morfini G, Brady ST. HIV Glycoprotein Gp120 Impairs Fast Axonal Transport by Activating Tak1 Signaling Pathways. ASN Neuro. 2016 Nov 20;8(6). (PubMed)
Bertolino E, Reinitz J, Manu. The analysis of novel distal Cebpa enhancers and silencers using a transcriptional model reveals the complex regulatory logic of hematopoietic lineage specification. Dev Biol. 2016 May 1;413(1):128-44. (PubMed)
Bhattacharyya S, Renn JP, Yu H, Marko JF, Matouschek A. An assay for 26S proteasome activity based on fluorescence anisotropy measurements of dye-labeled protein substrates. Anal Biochem. 2016 Sep 15;509:50-9. (PubMed)
Blackshaw S, Venkataraman A, Irizarry J, Yang K, Anderson S, Campbell E, Gatlin CL, Freeman NL, Basavappa R, Stewart R, Loss MA, Pino I, Zhu H, Bader JS. The NIH Protein Capture Reagents Program (PCRP): a standardized protein affinity reagent toolbox. Nat Methods. 2016 Sep 29;13(10):805-6. (PubMed)
Brangwynne CP, Marko JF. Cell division: A sticky problem for chromosomes. Nature. 2016 Jul 14;535(7611):234-5. (PubMed)
Brickner DG, Sood V, Tutucci E, Coukos R, Viets K, Singer R, Brickner JH. Subnuclear positioning and interchromosomal clustering of the GAL1-10 locus are controlled by separable, interdependent mechanisms. Mol Biol Cell. 2016 Oct 1;27(19):2980-93. (PubMed)
Brown AS, Kong SW, Kohane IS, Patel CJ. ksRepo: a generalized platform for computational drug repositioning. BMC Bioinformatics. 2016 Feb 9;17:78. (PubMed)
Burbulla LF, Beaumont KG, Mrksich M, Krainc D. Micropatterning Facilitates the Long-Term Growth and Analysis of iPSC-Derived Individual Human Neurons and Neuronal Networks. Adv Healthc Mater. 2016 Aug;5(15):1894-903. (PubMed)
Cade BE, Chen H, Stilp AM, Gleason KJ, Sofer T, Ancoli-Israel S, Arens R, Bell GI, Below JE, Bjonnes AC, Chun S, Conomos MP, Evans DS, Johnson WC, Frazier-Wood AC, Lane JM, Larkin EK, Loredo JS, Post WS, Ramos AR, Rice K, Rotter JI, Shah NA, Stone KL, Taylor KD, Thornton TA, Tranah GJ, Wang C, Zee PC, Hanis CL, Sunyaev SR, Patel SR, Laurie CC, Zhu X, Saxena R, Lin X, Redline S. Genetic Associations with Obstructive Sleep Apnea Traits in Hispanic/Latino Americans. Am J Respir Crit Care Med. 2016 Oct 1;194(7):886-897. (PubMed)
Cannon DS, Medina TR, Mermelstein RJ, Hedeker D, Bakian AV, Coon H, Cook EH, Hamil C, Weiss RB. CYP2A6 Longitudinal Effects in Young Smokers. Nicotine Tob Res. 2016 Feb;18(2):196-203. (PubMed)
Cao Y, Terebus A, Liang J. Accurate Chemical Master Equation Solution Using Multi-Finite Buffers. Multiscale Model Simul. 2016;14(2):923-963. (PubMed)
Cao Y, Terebus A, Liang J. State Space Truncation with Quantified Errors for Accurate Solutions to Discrete Chemical Master Equation. Bull Math Biol. 2016 Apr 22. (PubMed)
Caschera F, Lee JW, Ho KK, Liu AP, Jewett MC. Cell-free compartmentalized protein synthesis inside double emulsion templated liposomes with in vitro synthesized and assembled ribosomes. Chem Commun (Camb). 2016 Apr 7;52(31):5467-9. (PubMed)
Castro VM, Kong SW, Clements CC, Brady R, Kaimal AJ, Doyle AE, Robinson EB, Churchill SE, Kohane IS, Perlis RH. Absence of evidence for increase in risk for autism or attention-deficit hyperactivity disorder following antidepressant exposure during pregnancy: a replication study. Transl Psychiatry. 2016 Jan 5;6:e708. (PubMed)
Cassidy JJ, Straughn AJ, Carthew RW. Differential Masking of Natural Genetic Variation by miR-9a in Drosophila. Genetics. 2016 Feb;202(2):675-87. (PubMed)
Cavallo JS, Mayo LM, de Wit H. Acquisition of Conditioning between Methamphetamine and Cues in Healthy Humans. PLoS One. 2016 Aug 22;11(8):e0161541. eCollection 2016. (PubMed)
Cedernaes J, Bass J. Decoding obesity in the brainstem. Elife. 2016 May 9;5. (PubMed)
Chen NT, Barth ED, Cheng SH, Chen CT, Halpern HJ, Lo LW. Highly Sensitive Trityl-loaded Mesoporous Silica Nanoparticles (MSNs) for In Vivo Tumor Oxygen Measurements Using Electron Paramagnetic Resonance Imaging (EPRI). World Molecular imaging Congress (WMIC), Sep. 7-9, 2016. New York, U.S.A. (www.wmis.org)
Chen Y, McClure RA, Kelleher NL. Screening for Expressed Nonribosomal Peptide Synthetases and Polyketide Synthases Using LC-MS/MS-Based Proteomics. Methods Mol Biol. 2016;1401:135-47. (PubMed)
Cheng Y, Muroski ME, Petit DCMC, Mansell R, Vemulkar T, Morshed RA, Han Y, Balyasnikova IV, Horbinski CM, Huang X, Zhang L, Cowburn RP, Lesniak MS. Rotating magnetic field induced oscillation of magnetic particles for in vivo mechanical destruction of malignant glioma. J Control Release. 2016 Feb 10;223:75-84. (PubMed)
Cherkezyan L, Zhang D, Subramanian H, Taflove A, Backman V. Reconstruction of explicit structural properties at the nanoscale via spectroscopic microscopy. J Biomed Opt. 2016 Feb;21(2):25007. (PubMed)
Chinen AB, Ferrer JR, Merkel TJ, Mirkin CA. Relationships between Poly(ethylene glycol) Modifications on RNA-Spherical Nucleic Acid Conjugates and Cellular Uptake and Circulation Time. Bioconjug Chem. 2016 Nov 16;27(11):2715-2721. (PubMed)
Chuang Y, Hung ME, Cangelose BK, Leonard JN. Regulation of the IL-10-driven macrophage phenotype under incoherent stimuli. Innate Immun. 2016 Nov;22(8):647-657. (PubMed)
Ciryam P, Kundra R, Freer R, Morimoto RI, Dobson CM, Vendruscolo M. A transcriptional signature of Alzheimer’s disease is associated with a metastable subproteome at risk for aggregation. Proc Natl Acad Sci U S A. 2016 Apr 26;113(17):4753-8. (PubMed)
Clark WC, Evans ME, Dominissini D, Zheng G, Pan T. tRNA base methylation identification and quantification via high-throughput sequencing. RNA. 2016 Nov;22(11):1771-1784. (PubMed)
Clevenger KD, Bok JW, Ye R, Miley GP, Velk T, Chen C, Yang K, Gao P, Lamprecht M, Thomas PM, Islam MN, Wu CC, Keller NP, Kelleher NL. Large scale discovery and deorphanization of natural products using fungal artificial chromosomes and untargeted metabolomics (FAC-MS). Planta Med. 2016 Dec;81(S 01):S1-S381. (PubMed)
Cone JJ, Fortin SM, McHenry JA, Stuber GD, McCutcheon JE, Roitman MF. Physiological state gates acquisition and expression of mesolimbic reward prediction signals. Proc Natl Acad Sci U S A. 2016 Feb 16;113(7):1943-8. (PubMed)
Cook DC, Zdraljevic S, Tanny RE, Seo B, Riccardi DD, Noble LM, Rockman MV, Alkema MJ, Braendle C, Kammenga JE, Wang J, Kruglyak L, Félix MA, Lee J, Andersen EC. The genetic basis of natural variation in C. elegans telomere length. Genetics. 2016 Sep;204(1):371-83. (PubMed)
Cossairt O, He K, Shang R, Matsuda N, Sharma M, Huang X, Katsaggelos A, Spinoulas L, Yoo S. Compressive Reconstruction for 3D Incoherent Holographic Microscopy. International Conference on Image Processing (ICIP). September 2016. (ieeexplore.ieee.org)
Culver KS, Shin YJ, Rotz MW, Meade TJ, Hersam MC, Odom TW. Shape-Dependent Relaxivity of Nanoparticle-Based T1 Magnetic Resonance Imaging Contrast Agents. J Phys Chem C Nanomater Interfaces. 2016 Sep 29;120(38):22103-22109. (PubMed)
Czyż DM, Jain-Gupta N, Shuman HA, Crosson S. A dual-targeting approach to inhibit Brucella abortus replication in human cells. Sci Rep. 2016 Oct 21;6:35835. (PubMed)
D’Urso A, Takahashi YH, Xiong B, Marone J, Coukos R, Randise-Hinchliff C, Wang JP, Shilatifard A, Brickner JH. Set1/COMPASS and Mediator are repurposed to promote epigenetic transcriptional memory. Elife. 2016 Jun 23;5. (PubMed)
Das A, Shamirian A, T. Snee PT. Arsenic Silylamide: An Effective Precursor for Arsenide Semiconductor Nanocrystal Synthesis. Chem. Mater. Chem. Mater. 2016, 28 (11), pp 4058–4064. (pubs.acs.org)
DasGupta B, Liang J. Models and Algorithms for Biomolecules and Molecular Networks. (Book) IEEE Press Series in Biomedical Engineering. Metin Akay, Series Editor. 2016. (onlinelibrary.wiley.com)
Dekker J, Mirny L. The 3D Genome as Moderator of Chromosomal Communication. Cell. 2016 Mar 10;164(6):1110-21. Review. (PubMed)
Demeulemeester J, Kumar P, Møller EK, Nord S, Wedge DC, Peterson A, Mathiesen RR, Fjelldal R, Zamani Esteki M, Theunis K, Fernandez Gallardo E, Grundstad AJ, Borgen E, Baumbusch LO, Børresen-Dale AL, White KP, Kristensen VN, Van Loo P, Voet T, Naume B. Tracing the origin of disseminated tumor cells in breast cancer using single-cell sequencing. Genome Biol. 2016 Dec 9;17(1):250. (PubMed)
Demissie RD, Kabre P, Tuntland ML, Fung LW. An Efficient and Economical Assay to Screen for Triclosan Binding to FabI. J Biomol Screen. 2016 Apr;21(4):391-8. (PubMed)
Dominik PK, Borowska MT, Dalmas O, Kim SS, Perozo E, Keenan RJ, Kossiakoff AA. Conformational Chaperones for Structural Studies of Membrane Proteins Using Antibody Phage Display with Nanodiscs. Structure. 2016 Feb 2;24(2):300-9. (PubMed)
Dominissini D, Nachtergaele S, Moshitch-Moshkovitz S, Peer E, Kol N, Ben-Haim MS, Dai Q, Di Segni A, Salmon-Divon M, Clark WC, Zheng G, Pan T, Solomon O, Eyal E, Hershkovitz V, Han D, Doré LC, Amariglio N, Rechavi G, He C. The dynamic N(1)-methyladenosine methylome in eukaryotic messenger RNA. Nature. 2016 Feb 25;530(7591):441-6. (PubMed)
Dong B, Almassalha LM, Stypula-Cyrus Y, Urban BE, Chandler JE, Nguyen TQ, Sun C, Zhang HF, Backman V. Superresolution intrinsic fluorescence imaging of chromatin utilizing native, unmodified nucleic acids for contrast. Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):9716-21. (PubMed)
Dong B, Almassalha L, Urban BE, Nguyen TQ, Khuon S, Chew TL, Backman V, Sun C, Zhang HF. Super-resolution spectroscopic microscopy via photon localization. Nat Commun. 2016 Jul 25;7:12290. (PubMed)
Dubash AD, Kam CY, Aguado BA, Patel DM, Delmar M, Shea LD, Green KJ. Plakophilin-2 loss promotes TGF-β1/p38 MAPK-dependent fibrotic gene expression in cardiomyocytes. J Cell Biol. 2016 Feb 15;212(4):425-38. (PubMed)
Durak LJ, Payne JT, Lewis JC. Late-Stage Diversification of Biologically Active Molecules via Chemoenzymatic C-H Functionalization. ACS Catal. 2016 Mar 4;6(3):1451-1454. (PubMed)
Durbin KR, Fornelli L, Fellers RT, Doubleday PF, Narita M, Kelleher NL. Quantitation and Identification of Thousands of Human Proteoforms below 30 kDa. J Proteome Res. 2016 Mar 4;15(3):976-82. (PubMed)
Eastland A, Hornick J, Kawamura R, Nanavati D, Marko JF. Dependence of the structure and mechanics of metaphase chromosomes on oxidized cysteines. Chromosome Res. 2016 Sep;24(3):339-53. (PubMed)
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Eckert MA, Pan S, Hernandez KM, Loth RM, Andrade J, Volchenboum SL, Faber P, Montag A, Lastra R, Peter ME, Yamada SD, Lengyel E. Genomics of Ovarian Cancer Progression Reveals Diverse Metastatic Trajectories Including Intraepithelial Metastasis to the Fallopian Tube. Cancer Discov. 2016 Dec;6(12):1342-1351. (PubMed)
Efimova EV, Takahashi S, Shamsi NA, Wu D, Labay E, Ulanovskaya OA, Weichselbaum RR, Kozmin SA, Kron SJ. Linking Cancer Metabolism to DNA Repair and Accelerated Senescence. Mol Cancer Res. 2016 Feb;14(2):173-84. (PubMed)
Enjin A, Zaharieva EE, Frank DD, Mansourian S, Suh GS, Gallio M, Stensmyr MC. Humidity Sensing in Drosophila. Curr Biol. 2016 May 23;26(10):1352-8. (PubMed)
Estabrook R, Massey SH, Clark CA, Burns JL, Mustanski BS, Cook EH, O’Brien TC, Makowski B, Espy KA, Wakschlag LS. Separating Family-Level and Direct Exposure Effects of Smoking During Pregnancy on Offspring Externalizing Symptoms: Bridging the Behavior Genetic and Behavior Teratologic Divide. Behav Genet. 2016 May;46(3):389-402. (PubMed)
Farmer CA, Kaat AJ, Mazurek MO, Lainhart JE, DeWitt MB, Cook EH, Butter EM, Aman MG. Confirmation of the Factor Structure and Measurement Invariance of the Children’s Scale of Hostility and Aggression: Reactive/Proactive in Clinic-Referred Children With and Without Autism Spectrum Disorder. J Child Adolesc Psychopharmacol. 2016 Feb;26(1):10-8. (PubMed)
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Gürsoy G, Terebus A, Cao Y, Liang J. Mechanisms of Stochastic Focusing and Defocusing in Biological Reaction Networks: Insight from Accurate Chemical Master Equation (ACME) Solutions. Conf Proc IEEE Eng Med Biol Soc. 2016 Aug;2016:1480-1483. (PubMed)
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